2V1R

Yeast Pex13 SH3 domain complexed with a peptide from Pex14 at 2.1 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.191 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural Genomics of Yeast SH3 Domains

Kursula, P.Kursula, I.Pinotsis, N.Lehmann, F.Zou, P.Song, Y.H.Wilmanns, M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
PEROXISOMAL MEMBRANE PROTEIN PAS20
A, B
80Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: PEX13 (PAS20)
Find proteins for P80667 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: PEX13
Go to UniProtKB:  P80667
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
PEX14
P, Q, R
15Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: PEX14
Find proteins for P53112 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: PEX14
Go to UniProtKB:  P53112
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
ACE
Query on ACE
P, Q, R
NON-POLYMERC2 H4 O

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Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.191 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 36.440α = 86.85
b = 39.090β = 65.46
c = 39.140γ = 62.04
Software Package:
Software NamePurpose
XDSdata reduction
PHENIXrefinement
PHENIXrefinement
XSCALEdata scaling
MOLREPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2008-06-03
    Type: Initial release
  • Version 1.1: 2013-08-07
    Type: Derived calculations, Other, Version format compliance