2UUT | pdb_00002uut

The 2.4 angstrom resolution structure of the D346G mutant of the Sapporo Virus RdRp polymerase

• PDB DOI: https://doi.org/10.2210/pdb2UUT/pdb

• Classification: HYDROLASE
• Organism(s): Sapporo virus
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): Yes 


• Deposited: 2007-03-07 Released: 2007-05-01 
• Deposition Author(s): Fullerton, S.W.B., Robel, I., Schuldt, L., Gebhardt, J., Tucker, P., Rohayem, J.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 
  0.256 (Depositor), 0.214 (DCC) 
• R-Value Work: 
  0.198 (Depositor), 0.197 (DCC) 
• R-Value Observed: 
  0.200 (Depositor) 

Starting Model: experimental

Literature

The 2.4 Angstrom Resolution Structure of the D346G Mutant of the Sapporo Virus Rdrp Polymerase

Fullerton, S.W.B., Robel, I., Schuldt, L., Gebhardt, J., Tucker, P., Rohayem, J.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PQS (software)

Macromolecule Content 

• Total Structure Weight: 55.74 kDa 
• Atom Count: 4,091 
• Modeled Residue Count: 492 
• Deposited Residue Count: 508 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RNA-DIRECTED RNA POLYMERASE	A	508	Sapporo virus	Mutation(s): 1  EC: 2.7.7.48
UniProt
Find proteins for Q69014 (Sapporo virus (strain Human/United Kingdom/Manchester/1993)) Explore Q69014  Go to UniProtKB:  Q69014

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free:  0.256 (Depositor), 0.214 (DCC) 
• R-Value Work:  0.198 (Depositor), 0.197 (DCC) 
• R-Value Observed: 0.200 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 59.374	α = 90
b = 93.018	β = 90
c = 96.044	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling
AMoRE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-05-01 
Deposition Author(s): Fullerton, S.W.B., Robel, I., Schuldt, L., Gebhardt, J., Tucker, P., Rohayem, J.

Revision History  

• Version 1.0: 2007-05-01
  Type: Initial release
  
• Version 1.1: 2011-05-08
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2019-07-24
  Changes: Data collection
• Version 1.4: 2023-12-13
  Changes: Data collection, Database references, Other, Refinement description