2UTG | pdb_00002utg

STRUCTURE AND REFINEMENT OF THE OXIDIZED P21 FORM OF UTEROGLOBIN AT 1.64 ANGSTROMS RESOLUTION


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.64 Å
  • R-Value Observed: 
    0.190 (Depositor) 

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This is version 1.4 of the entry. See complete history

Literature

Structure and refinement of the oxidized P21 form of uteroglobin at 1.64 A resolution.

Bally, R.Delettre, J.

(1989) J Mol Biology 206: 153-170

  • DOI: https://doi.org/10.1016/0022-2836(89)90530-5
  • Primary Citation Related Structures: 
    2UTG

  • PubMed Abstract: 

    One of the monoclinic P21 forms of uteroglobin, a progesterone-binding protein secreted by the rabbit uterus, was crystallized and subjected to X-ray diffraction analysis at 1.64 A resolution. The analysis was refined to an R factor of 0.19 and the 1096 non-hydrogen atomic positions are known to an accuracy of about 0.18 A. The average isotropic temperature factor B was 10.4 A2. Uteroglobin is a dimer of two independent polypeptide chains of 70 residues linked by two disulfide bridges and related by a pseudo binary axis. Each monomer is folded into four alpha-helices. An oblong hydrophobic pocket is observed inside the dimer, and the possibility that it represents a progesterone-binding site is discussed. The present model includes 165 possible sites for water molecules, of which six are located in the hydrophobic pocket. Polar groups are involved in hydrogen bonding (intramolecular, intermolecular or with water molecules).


  • Organizational Affiliation
    • Laboratoire de Minéralogie-Cristallographie associé au CNRS, Université Paris, France.

Macromolecule Content 

  • Total Structure Weight: 15.82 kDa 
  • Atom Count: 1,261 
  • Modeled Residue Count: 140 
  • Deposited Residue Count: 140 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
UTEROGLOBIN
A, B
70Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for P02779 (Oryctolagus cuniculus)
Explore P02779 
Go to UniProtKB:  P02779
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP02779
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.64 Å
  • R-Value Observed: 0.190 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 44.56α = 90
b = 46.06β = 120.92
c = 37.43γ = 90
Software Package:
Software NamePurpose
PROLSQrefinement

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1989-10-15
    Type: Initial release
  • Version 1.1: 2008-03-25
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2017-11-29
    Changes: Derived calculations, Other
  • Version 1.4: 2024-10-23
    Changes: Data collection, Database references, Structure summary