2TBV

STRUCTURE OF TOMATO BUSHY STUNT VIRUS. V. COAT PROTEIN SEQUENCE DETERMINATION AND ITS STRUCTURAL IMPLICATIONS


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structure of tomato bushy stunt virus. V. Coat protein sequence determination and its structural implications

Hopper, P.Harrison, S.C.Sauer, R.T.

(1984) J.Mol.Biol. 177: 701-713


  • PubMed Abstract: 
  • We report the chemically determined sequence of most of the polypeptide chain of the coat protein of tomato bushy stunt virus. Peptide locations have been determined by comparison with the high-resolution electron density map from X-ray crystallograp ...

    We report the chemically determined sequence of most of the polypeptide chain of the coat protein of tomato bushy stunt virus. Peptide locations have been determined by comparison with the high-resolution electron density map from X-ray crystallographic analysis as well as by conventional chemical overlaps. Three small gaps remain in the 387-residue sequence. Positively charged side-chains are concentrated in the N-terminal part of the polypeptide (the R domain) as well as on inward-facing surfaces of the S domain. There is homology of S-domain sequences with structurally corresponding residues in southern bean mosaic virus.


    Related Citations: 
    • Structure of Tomato Bushy Stunt Virus. Iv. The Virus Particle at 2.9 Angstroms Resolution
      Olson, A.J.,Bricogne, G.,Harrison, S.C.
      (1983) J.Mol.Biol. 171: 61
    • Tomato Bushy Stunt Virus at 5.5-Angstroms Resolution
      Winkler, F.K.,Schutt, C.E.,Harrison, S.C.,Bricogne, G.
      (1977) Nature 265: 509
    • Protein Interfaces and Intersubunit Bonding. The Case of Tomato Bushy Stunt Virus
      Harrison, S.C.
      (1980) Biophys.J. 32: 139
    • Tomato Bushy Stunt Virus at 2.9 Angstroms Resolution
      Harrison, S.C.,Olson, A.J.,Schutt, C.E.,Winkler, F.K.,Bricogne, G.
      (1978) Nature 276: 368
    • Structure of Tomato Bushy Stunt Virus. I. The Spherically Averaged Electron Density
      Harrison, S.C.
      (1969) J.Mol.Biol. 42: 457
    • Divalent Cation Sites in Tomato Bushy Stunt Virus. Difference Maps at 2.9 Angstroms Resolution
      Hogle, J.,Kirchhausen, T.,Harrison, S.C.
      (1983) J.Mol.Biol. 171: 95



Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
TOMATO BUSHY STUNT VIRUS
A, B, C
387Tomato bushy stunt virus (strain BS-3)
Find proteins for P11795 (Tomato bushy stunt virus (strain BS-3))
Go to UniProtKB:  P11795
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA

Download SDF File 
Download CCD File 
A, B, C
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • Space Group: I 2 3
Unit Cell:
Length (Å)Angle (°)
a = 383.200α = 90.00
b = 383.200β = 90.00
c = 383.200γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 1984-06-22 
  • Released Date: 1984-07-20 
  • Deposition Author(s): Harrison, S.C.

Revision History 

  • Version 1.0: 1984-07-20
    Type: Initial release
  • Version 1.1: 2008-03-25
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance