2RVF

Solution NMR structure of Monosiga brevicollis CRK/CRKL homolog (crka1) SH2 domain


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 21 
  • Selection Criteria: target function 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

A pre-metazoan origin of the CRK gene family and co-opted signaling network

Shigeno-Nakazawa, Y.Kasai, T.Ki, S.Kostyanovskaya, E.Pawlak, J.Yamagishi, J.Okimoto, N.Taiji, M.Okada, M.Westbrook, J.Satta, Y.Kigawa, T.Imamoto, A.

(2016) Sci Rep 6: 34349-34349

  • DOI: https://doi.org/10.1038/srep34349
  • Primary Citation of Related Structures:  
    2RVF

  • PubMed Abstract: 

    CRK and CRKL adapter proteins play essential roles in development and cancer through their SRC homology 2 and 3 (SH2 and SH3) domains. To gain insight into the origin of their shared functions, we have investigated their evolutionary history. We propose a term, crk/crkl ancestral (crka), for orthologs in invertebrates before the divergence of CRK and CRKL in the vertebrate ancestor. We have isolated two orthologs expressed in the choanoflagellate Monosiga brevicollis, a unicellular relative to the metazoans. Consistent with its highly-conserved three-dimensional structure, the SH2 domain of M. brevicollis crka1 can bind to the mammalian CRK/CRKL SH2 binding consensus phospho-YxxP, and to the SRC substrate/focal adhesion protein BCAR1 (p130 CAS ) in the presence of activated SRC. These results demonstrate an ancient origin of the CRK/CRKL SH2-target recognition specificity. Although BCAR1 orthologs exist only in metazoans as identified by an N-terminal SH3 domain, YxxP motifs, and a C-terminal FAT-like domain, some pre-metazoan transmembrane proteins include several YxxP repeats in their cytosolic region, suggesting that they are remotely related to the BCAR1 substrate domain. Since the tyrosine kinase SRC also has a pre-metazoan origin, co-option of BCAR1-related sequences may have rewired the crka-dependent network to mediate adhesion signals in the metazoan ancestor.


  • Organizational Affiliation

    The Ben May Department for Cancer Research, The University of Chicago, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Predicted protein104Monosiga brevicollisMutation(s): 0 
Gene Names: 25438crka1
UniProt
Find proteins for A9UZF4 (Monosiga brevicollis)
Explore A9UZF4 
Go to UniProtKB:  A9UZF4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA9UZF4
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 21 
  • Selection Criteria: target function 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-09-21
    Type: Initial release
  • Version 1.1: 2016-10-12
    Changes: Database references
  • Version 1.2: 2023-06-14
    Changes: Data collection, Database references, Other