2REW

Crystal Structure of PPARalpha ligand binding domain with BMS-631707


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.245 
  • R-Value Work: 0.197 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Discovery of Azetidinone Acids as Conformationally-Constrained Dual (alpha/gamma) PPAR Activators

Wang, W.Devasthale, P.Farrelly, D.Gu, L.Peters, A.Harrity, T.Cap, M.Chu, C.Kunselman, L.Morgan, N.Ponticiello, R.Zebo, R.Zhang, L.Locke, K.Lippy, J.O'Malley, K.Hosagrahara, V.Zhang, L.Kadiyala, P.Chang, C.Y.Muckelbauer, J.Zahler, R.Hariharan, N.Ryono, D.Cheng, P.T.W.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Peroxisome proliferator-activated receptor alpha
A
277Homo sapiensMutation(s): 0 
Gene Names: PPARA (NR1C1, PPAR)
Find proteins for Q07869 (Homo sapiens)
Go to Gene View: PPARA
Go to UniProtKB:  Q07869
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CPQ
Query on CPQ

Download SDF File 
Download CCD File 
A
N,N-BIS(3-D-GLUCONAMIDOPROPYL)DEOXYCHOLAMIDE
DEOXY-BIGCHAP
C42 H75 N3 O15
OJSUWTDDXLCUFR-HGZMBBKESA-N
 Ligand Interaction
REW
Query on REW

Download SDF File 
Download CCD File 
A
(2S,3S)-1-(4-METHOXYPHENYL)-3-(3-(2-(5-METHYL-2-PHENYLOXAZOL-4-YL)ETHOXY)BENZYL)-4-OXOAZETIDINE-2-CARBOXYLIC ACID
4-[2-(3-{[(2S,3S)-2-carboxy-1-(4-methoxyphenyl)-4-oxoazetidin-3-yl]methyl}phenoxy)ethyl]-5-methyl-2-phenyl-1,3-oxazol-3-ium
C30 H28 N2 O6
DKIUFVFEAUCDLY-BDYUSTAISA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.245 
  • R-Value Work: 0.197 
  • Space Group: P 31 2 1
Unit Cell:
Length (Å)Angle (°)
a = 78.264α = 90.00
b = 78.264β = 90.00
c = 98.715γ = 120.00
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data scaling
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing
ADSCdata collection
HKL-2000data reduction
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2007-09-27 
  • Released Date: 2007-11-27 
  • Deposition Author(s): Muckelbauer, J.

Revision History 

  • Version 1.0: 2007-11-27
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2017-10-25
    Type: Refinement description