2REW

Crystal Structure of PPARalpha ligand binding domain with BMS-631707


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.245 
  • R-Value Work: 0.197 
  • R-Value Observed: 0.199 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history


Literature

Discovery of Azetidinone Acids as Conformationally-Constrained Dual (alpha/gamma) PPAR Activators

Wang, W.Devasthale, P.Farrelly, D.Gu, L.Peters, A.Harrity, T.Cap, M.Chu, C.Kunselman, L.Morgan, N.Ponticiello, R.Zebo, R.Zhang, L.Locke, K.Lippy, J.O'Malley, K.Hosagrahara, V.Zhang, L.Kadiyala, P.Chang, C.Y.Muckelbauer, J.Zahler, R.Hariharan, N.Ryono, D.Cheng, P.T.W.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Peroxisome proliferator-activated receptor alphaA277Homo sapiensMutation(s): 0 
Gene Names: PPARANR1C1PPAR
UniProt & NIH Common Fund Data Resources
Find proteins for Q07869 (Homo sapiens)
Explore Q07869 
Go to UniProtKB:  Q07869
PHAROS:  Q07869
GTEx:  ENSG00000186951 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ07869
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CPQ
Query on CPQ

Download Ideal Coordinates CCD File 
B [auth A]N,N-BIS(3-D-GLUCONAMIDOPROPYL)DEOXYCHOLAMIDE
C42 H75 N3 O15
OJSUWTDDXLCUFR-HGZMBBKESA-N
 Ligand Interaction
REW
Query on REW

Download Ideal Coordinates CCD File 
C [auth A](2S,3S)-1-(4-METHOXYPHENYL)-3-(3-(2-(5-METHYL-2-PHENYLOXAZOL-4-YL)ETHOXY)BENZYL)-4-OXOAZETIDINE-2-CARBOXYLIC ACID
C30 H28 N2 O6
DKIUFVFEAUCDLY-BDYUSTAISA-N
 Ligand Interaction
Binding Affinity Annotations 
IDSourceBinding Affinity
REW BindingDB:  2REW IC50: 360 (nM) from 1 assay(s)
EC50: 70 (nM) from 1 assay(s)
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.245 
  • R-Value Work: 0.197 
  • R-Value Observed: 0.199 
  • Space Group: P 31 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 78.264α = 90
b = 78.264β = 90
c = 98.715γ = 120
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction
ADSCdata collection
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 



Entry History 

Deposition Data

  • Deposited Date: 2007-09-27 
  • Released Date: 2007-11-27 
  • Deposition Author(s): Muckelbauer, J.

Revision History  (Full details and data files)

  • Version 1.0: 2007-11-27
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2017-10-25
    Changes: Refinement description