Structure determination of rubredoxin from Desulfovibrio vulgaris Miyazaki F in two crystal forms.Misaki, S., Morimoto, Y., Ogata, M., Yagi, T., Higuchi, Y., Yasuoka, N.
(1999) Acta Crystallogr D Biol Crystallogr 55: 408-413
- PubMed: 10089348
- DOI: 10.1107/s0907444998011810
- Primary Citation of Related Structures:
- PubMed Abstract:
- Preliminary Crystallographic Study of Two Crystal Forms of Rubredoxin from Sulfate-Reducing Bactrium
Higuchi, Y., Sugiyama, M.S., Morimoto, S., Ogata, Y., Yagi, M., Yasuoka, T.
(1998) Protein Pept Lett 5: 175
The structures of two crystal forms (form I, P3221, a = b = 43.7, c = 50.7 A; form II, P21, a = 27.3, b = 44.9, c = 51.2 A and beta = 90. 6 degrees ) of the rubredoxin from Desulfovibrio vulgaris Miyazaki F have been solved by the molecular-replacement method ...
The structures of two crystal forms (form I, P3221, a = b = 43.7, c = 50.7 A; form II, P21, a = 27.3, b = 44.9, c = 51.2 A and beta = 90. 6 degrees ) of the rubredoxin from Desulfovibrio vulgaris Miyazaki F have been solved by the molecular-replacement method. Form I has been refined at a resolution of 2.0 A to an R value of 20.8% and includes 32 water molecules. Form II includes 86 water molecules and has been refined at 1.9 A resolution to an R value of 17.5%. In form II, there are three molecules in the asymmetric unit with the molecules related by a non-crystallographic 32 symmetry axis. In both crystal forms, it was found that only a few residues effectively participate in the formation of intermolecular contacts along both the crystallographic (form I) and the non-crystallographic (form II) 32 axes. The crystal structure of the form II crystal is compared with those of other rubredoxin molecules from anaerobic bacteria. From this comparison, a similarity in the core region, which is composed of aromatic residues and includes the active centre, has been revealed.
Department of Life Science, Faculty of Science, Himeji Institute of Technology, Kanaji 1475-2, Kamigori, Ako-gun, Hyogo 678-1297, Japan.