2RD6

PARP complexed with A861695


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.308 
  • R-Value Work: 0.228 
  • R-Value Observed: 0.243 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

PARP complexed with A861695

Park, C.H.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Poly [ADP-ribose] polymerase 1A350Homo sapiensMutation(s): 0 
Gene Names: PARP1ADPRTPPOL
EC: 2.4.2.30 (PDB Primary Data), 2.4.2 (UniProt)
Find proteins for P09874 (Homo sapiens)
Explore P09874 
Go to UniProtKB:  P09874
NIH Common Fund Data Resources
PHAROS  P09874
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
78P
Query on 78P

Download CCD File 
A
(2R)-2-(7-carbamoyl-1H-benzimidazol-2-yl)-2-methylpyrrolidinium
C13 H16 N4 O
JNAHVYVRKWKWKQ-CYBMUJFWSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
78PIC50:  3.299999952316284   nM  BindingDB
78PIC50:  10   nM  BindingDB
78PIC50:  35   nM  BindingDB
78PEC50:  5.900000095367432   nM  BindingDB
78PEC50:  2   nM  BindingDB
78PIC50:  5.199999809265137   nM  BindingDB
78PIC50:  132   nM  BindingDB
78PIC50:  4.699999809265137   nM  BindingDB
78PEC50:  3000   nM  BindingDB
78PIC50:  6   nM  BindingDB
78PIC50:  354   nM  BindingDB
78PIC50:  355   nM  BindingDB
78PIC50:  19   nM  BindingDB
78PIC50:  5   nM  BindingDB
78PKi :  5   nM  PDBBind
78PIC50:  16   nM  BindingDB
78PKi:  5   nM  BindingDB
78PKd:  1.7000000476837158   nM  BindingDB
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.308 
  • R-Value Work: 0.228 
  • R-Value Observed: 0.243 
  • Space Group: P 3 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 94.537α = 90
b = 94.537β = 90
c = 68.502γ = 120
Software Package:
Software NamePurpose
CNXrefinement
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling
CNSphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Deposited Date: 2007-09-21 
  • Released Date: 2008-09-23 
  • Deposition Author(s): Park, C.H.

Revision History 

  • Version 1.0: 2008-09-23
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance