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Download EndnoteCrystal structure of putative class I ribonucleotide reductase (NP_241368.1) from Bacillus halodurans at 1.90 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
2RCC
Crystal structure of putative class I ribonucleotide reductase (NP_241368.1) from Bacillus halodurans at 1.90 A resolution
- DOI: 10.2210/pdb2RCC/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
- Expression System: Escherichia coli
- Deposited: 2007-09-19 Released: 2007-10-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.9 Å
- R-Value Free: 0.215
- R-Value Work: 0.183
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Ribonucleoside-diphosphate reductase subunit beta | A, B, C | 346 | Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) | Mutation(s): 0 Gene Names: nrdB EC: 1.17.4.1 |
Find proteins for Q9KFH7 (Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)) Go to UniProtKB: Q9KFH7 | ||||
Small Molecules
| Ligands 6 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | B, C | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | Ligand Interaction | |
| GOL Query on GOL | B, C | GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| EDO Query on EDO | B | 1,2-ETHANEDIOL ETHYLENE GLYCOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
| PG4 Query on PG4 | A | TETRAETHYLENE GLYCOL C8 H18 O5 UWHCKJMYHZGTIT-UHFFFAOYSA-N |  | Ligand Interaction | |
| PGE Query on PGE | B | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N |  | Ligand Interaction | |
| PEG Query on PEG | A, B, C | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.9 Å
- R-Value Free: 0.215
- R-Value Work: 0.183
- Space Group: C 1 2 1
- Diffraction Data DOI:
10.18430/M32RCC Protein Diffraction
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 175.260 | α = 90.00 |
| b = 72.780 | β = 124.90 |
| c = 111.770 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| PDB_EXTRACT | data extraction |
| REFMAC | refinement |
| MAR345 | data collection |
| MolProbity | model building |
| SHELX | phasing |
| XSCALE | data scaling |
| SHARP | phasing |
| XDS | data reduction |
| SHELXD | phasing |
| PHENIX | refinement |
Entry History
Deposition Data
- Deposited Date: 2007-09-19
- Released Date: 2007-10-02
- Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History
- Version 1.0: 2007-10-02
Type: Initial release - Version 1.1: 2011-07-13
Type: Advisory, Version format compliance - Version 1.2: 2017-10-25
Type: Author supporting evidence, Refinement description
