2R9O

Cathepsin S complexed with Compound 8


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.217 
  • R-Value Work: 0.184 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Design and Synthesis of Reversible Inhibitors of Cathepsin S: alpha,alpha-Disubstitution at the P1 Residue Provides Potent Inhibitors in Cellular Assays and In Vivo Models of Antigen Presentation

Ward, Y.D.Emmanuel, M.J.Thomson, D.S.Liu, W.Bekkali, Y.Frye, L.L.Girardot, M.Morwick, T.Young, E.R.R.Zindell, R.Hrapchak, M.DeTuri, M.White, A.Crane, K.M.White, D.M.Wang, Y.Hao, M.-H.Grygon, C.A.Labadia, M.E.Wildeson, J.Freeman, D.Nelson, R.Capolino, A.Peterson, J.D.Raymond, E.L.Brown, M.L.Spero, D.M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Cathepsin S
A, B
222Homo sapiensMutation(s): 0 
Gene Names: CTSS
EC: 3.4.22.27
Find proteins for P25774 (Homo sapiens)
Go to Gene View: CTSS
Go to UniProtKB:  P25774
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
Y15
Query on Y15

Download SDF File 
Download CCD File 
A, B
N-[(1S)-2-{[(1R)-2-(benzyloxy)-1-cyano-1-methylethyl]amino}-1-(cyclohexylmethyl)-2-oxoethyl]morpholine-4-carboxamide
C25 H36 N4 O4
MQWUTQCRGGBPBT-WIOPSUGQSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.217 
  • R-Value Work: 0.184 
  • Space Group: P 41 2 2
Unit Cell:
Length (Å)Angle (°)
a = 85.337α = 90.00
b = 85.337β = 90.00
c = 150.316γ = 90.00
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
PDB_EXTRACTdata extraction
X-PLORphasing
X-PLORrefinement
CNSrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2007-12-18
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance