2R9N

Cathepsin S complexed with Compound 26


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.220 
  • R-Value Work: 0.183 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Design and Synthesis of Reversible Inhibitors of Cathepsin S: alpha,alpha-Disubstitution at the P1 Residue Provides Potent Inhibitors in Cellular Assays and In Vivo Models of Antigen Presentation

Ward, Y.D.Emmanuel, M.J.Thomson, D.S.Liu, W.Bekkali, Y.Frye, L.L.Girardot, M.Morwick, T.Young, E.R.R.Zindell, R.Hrapchak, M.DeTuri, M.White, A.Crane, K.M.White, D.M.Wang, Y.Hao, M.-H.Grygon, C.A.Labadia, M.E.Wildeson, J.Freeman, D.Nelson, R.Capolino, A.Peterson, J.D.Raymond, E.L.Brown, M.L.Spero, D.M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Cathepsin S
A, B
222Homo sapiensMutation(s): 0 
Gene Names: CTSS
EC: 3.4.22.27
Find proteins for P25774 (Homo sapiens)
Go to Gene View: CTSS
Go to UniProtKB:  P25774
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
Y14
Query on Y14

Download SDF File 
Download CCD File 
A, B
N-[(1S)-2-{[(3S)-1-benzyl-3-cyanopyrrolidin-3-yl]amino}-1-(cyclohexylmethyl)-2-oxoethyl]morpholine-4-carboxamide
C26 H37 N5 O3
OHVQFYYBGNOGJV-JYFHCDHNSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.220 
  • R-Value Work: 0.183 
  • Space Group: P 41 2 2
Unit Cell:
Length (Å)Angle (°)
a = 85.296α = 90.00
b = 85.296β = 90.00
c = 149.961γ = 90.00
Software Package:
Software NamePurpose
X-PLORphasing
PDB_EXTRACTdata extraction
CNSrefinement
X-PLORrefinement
SCALEPACKdata scaling
DENZOdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2007-12-18
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance