2R8W

The crystal structure of dihydrodipicolinate synthase (Atu0899) from Agrobacterium tumefaciens str. C58


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.184 
  • R-Value Work: 0.158 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

The crystal structure of dihydrodipicolinate synthase (Atu0899) from Agrobacterium tumefaciens str. C58.

Tan, K.Dong, A.Xu, X.Gu, J.Zheng, H.Edwards, A.M.Savchenko, A.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
AGR_C_1641p
A, B
332Agrobacterium fabrum (strain C58 / ATCC 33970)Mutation(s): 0 
Gene Names: dapA
Find proteins for Q7D0E8 (Agrobacterium fabrum (strain C58 / ATCC 33970))
Go to UniProtKB:  Q7D0E8
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ACT
Query on ACT

Download SDF File 
Download CCD File 
A, B
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.184 
  • R-Value Work: 0.158 
  • Space Group: P 64
Unit Cell:
Length (Å)Angle (°)
a = 95.994α = 90.00
b = 95.994β = 90.00
c = 103.120γ = 120.00
Software Package:
Software NamePurpose
HKL-3000data reduction
SBC-Collectdata collection
DMphasing
MLPHAREphasing
HKL-3000data scaling
REFMACrefinement
HKL-3000phasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2007-09-25
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Source and taxonomy, Version format compliance