2R8D

The structure of transporter associated domain CorC_HlyC from a Xylella fastidiosa Temecula1 hemolysin in complex with Mg++ and Mn++


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.220 
  • R-Value Work: 0.171 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

The structure of transporter associated domain CorC in complex with Mg++ and Mn++ from Xylella fastidiosa.

Cuff, M.E.Volkart, L.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Hemolysin
A
94Xylella fastidiosa (strain Temecula1 / ATCC 700964)Mutation(s): 0 
Gene Names: tlyC
Find proteins for Q87DZ3 (Xylella fastidiosa (strain Temecula1 / ATCC 700964))
Go to UniProtKB:  Q87DZ3
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MN
Query on MN

Download SDF File 
Download CCD File 
A
MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
MLY
Query on MLY
A
L-PEPTIDE LINKINGC8 H18 N2 O2LYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.220 
  • R-Value Work: 0.171 
  • Space Group: I 2 3
Unit Cell:
Length (Å)Angle (°)
a = 88.061α = 90.00
b = 88.061β = 90.00
c = 88.061γ = 90.00
Software Package:
Software NamePurpose
DMphasing
Omodel building
REFMACrefinement
SHELXDphasing
HKL-3000data scaling
ARP/wARPmodel building
SHELXEmodel building
Cootmodel building
PDB_EXTRACTdata extraction
HKL-3000data reduction
HKL-3000phasing
SCALEPACKdata scaling
DENZOdata reduction
SOLVEphasing
RESOLVEphasing
MLPHAREphasing
SBC-Collectdata collection
CCP4phasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2007-11-13
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Source and taxonomy, Version format compliance
  • Version 1.2: 2017-10-25
    Type: Refinement description