2QZ5 | pdb_00002qz5

Crystal Structure of the C-terminal domain of Aida

PDB DOI: https://doi.org/10.2210/pdb2QZ5/pdb

Classification: SIGNALING PROTEIN, LIPID BINDING PROTEIN
Organism(s): Mus musculus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2007-08-16 Released: 2008-09-23
Deposition Author(s): Zheng, L.S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free:
0.289 (Depositor), 8.190 (DCC)
R-Value Work:
0.225 (Depositor), 0.440 (DCC)
R-Value Observed:
0.234 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Crystal Structure of the C-terminal domain of Aida

Zheng, L.S.

To be published.

Macromolecule Content

Total Structure Weight: 35.75 kDa
Atom Count: 2,558
Modeled Residue Count: 306
Deposited Residue Count: 310
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Axin interactor, dorsalization associated protein	A, B	155	Mus musculus	Mutation(s): 0 Gene Names: Aida
UniProt
Find proteins for Q8C4Q6 (Mus musculus) Explore Q8C4Q6 Go to UniProtKB: Q8C4Q6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q8C4Q6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free: 0.289 (Depositor), 8.190 (DCC)
R-Value Work: 0.225 (Depositor), 0.440 (DCC)
R-Value Observed: 0.234 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 32.707	α = 90
b = 55.732	β = 100.34
c = 86.993	γ = 90

Software Package:

Software Name	Purpose
MAR345dtb	data collection
MOLREP	phasing
CNS	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2008-09-23

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2008-09-23
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2023-10-25
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.