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Download EndnoteCrystal structure of uncharacterized protein (YP_926603.1) from Shewanella amazonensis SB2B at 2.00 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
2QVP
CRYSTAL STRUCTURE OF A PUTATIVE METALLOPEPTIDASE (SAMA_0725) FROM SHEWANELLA AMAZONENSIS SB2B AT 2.00 A RESOLUTION
- DOI: 10.2210/pdb2QVP/pdb
- Classification: HYDROLASE
- Organism(s): Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
- Expression System: Escherichia coli
- Deposited: 2007-08-08 Released: 2007-08-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2 Å
- R-Value Free: 0.213
- R-Value Work: 0.161
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Uncharacterized protein | A, B, C | 275 | Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) | Mutation(s): 0 |
Find proteins for A1S3H7 (Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)) Go to UniProtKB: A1S3H7 | ||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | A, B, C | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| GOL Query on GOL | A, B, C | GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2 Å
- R-Value Free: 0.213
- R-Value Work: 0.161
- Space Group: P 1 21 1
- Diffraction Data DOI:
10.18430/M32QVP Protein Diffraction
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 64.040 | α = 90.00 |
| b = 74.750 | β = 95.19 |
| c = 96.120 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| SHELX | phasing |
| MAR345 | data collection |
| XDS | data reduction |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| SHELXD | phasing |
| XSCALE | data scaling |
| REFMAC | refinement |
| MolProbity | model building |
| SHARP | phasing |
Entry History
Deposition Data
- Deposited Date: 2007-08-08
- Released Date: 2007-08-28
- Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History
- Version 1.0: 2007-08-28
Type: Initial release - Version 1.1: 2011-07-13
Type: Advisory, Refinement description, Source and taxonomy, Version format compliance - Version 1.2: 2017-10-25
Type: Author supporting evidence, Refinement description
