2QVI

Crystal structure of N-cadherin domains EC12


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.012 Å
  • R-Value Free: 0.299 
  • R-Value Work: 0.254 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Biophysical characterization of N-cadherin and E-cadherin homophilic and heterophilic interactions

Shapiro, L.S.Carroll, K.J.Honig, B.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Cadherin-2
A
215Mus musculusMutation(s): 0 
Gene Names: Cdh2
Find proteins for P15116 (Mus musculus)
Go to UniProtKB:  P15116
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA

Download SDF File 
Download CCD File 
A
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.012 Å
  • R-Value Free: 0.299 
  • R-Value Work: 0.254 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 114.657α = 90.00
b = 86.902β = 97.73
c = 46.708γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
CNSrefinement
PDB_EXTRACTdata extraction
SCALEPACKdata scaling
PHASERphasing
HKL-2000data scaling
DENZOdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2008-08-12
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2017-10-25
    Type: Refinement description