2QVH

Crystal structure of O-succinylbenzoate synthase complexed with O-succinyl benzoate (OSB)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.76 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.218 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of O-succinylbenzoate synthase complexed with O-succinyl benzoate.

Sugadev, R.Burley, S.K.Swaminathan, S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
O-succinylbenzoate-CoA synthase
A, B
327Thermobifida fusca (strain YX)Mutation(s): 0 
Gene Names: menC
EC: 4.2.1.113
Find proteins for Q47Q21 (Thermobifida fusca (strain YX))
Go to UniProtKB:  Q47Q21
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MG
Query on MG

Download SDF File 
Download CCD File 
A, B
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
OSB
Query on OSB

Download SDF File 
Download CCD File 
A, B
2-SUCCINYLBENZOATE
O-SUCCINYLBENZOATE
C11 H10 O5
YIVWQNVQRXFZJB-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.76 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.218 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 44.543α = 70.53
b = 52.877β = 87.22
c = 61.449γ = 85.56
Software Package:
Software NamePurpose
MOLREPphasing
CNSrefinement
HKL-2000data reduction
CBASSdata collection
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2007-08-28
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Source and taxonomy, Version format compliance