2QSI

Crystal structure of putative hydrogenase expression/formation protein hupG from Rhodopseudomonas palustris CGA009


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.201 
  • R-Value Work: 0.152 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structure of putative hydrogenase expression/formation protein hupG from Rhodopseudomonas palustris CGA009.

Nocek, B.Skarina, T.Kagan, O.Savchenko, A.Edwards, A.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Putative hydrogenase expression/formation protein hupG
A, B
137Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)Mutation(s): 0 
Gene Names: hupG
Find proteins for Q6NB62 (Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009))
Go to UniProtKB:  Q6NB62
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
DTT
Query on DTT

Download SDF File 
Download CCD File 
A, B
2,3-DIHYDROXY-1,4-DITHIOBUTANE
1,4-DITHIOTHREITOL
C4 H10 O2 S2
VHJLVAABSRFDPM-IMJSIDKUSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.201 
  • R-Value Work: 0.152 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 31.575α = 107.72
b = 41.126β = 99.85
c = 46.850γ = 101.75
Software Package:
Software NamePurpose
Omodel building
DMphasing
SBC-Collectdata collection
ARP/wARPmodel building
CCP4phasing
Cootmodel building
SHELXEmodel building
HKL-3000phasing
SOLVEphasing
TLSMDphasing
HKL-3000data scaling
REFMACrefinement
HKL-3000data reduction
MLPHAREphasing
RESOLVEphasing
SHELXDphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2007-08-14
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Source and taxonomy, Version format compliance