2QSB

Crystal structure of a protein from uncharacterized family UPF0147 from Thermoplasma acidophilum


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.178 
  • R-Value Work: 0.147 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structure of a protein from uncharacterized family UPF0147 from Thermoplasma acidophilum.

Cuff, M.E.Duggan, E.Gu, M.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
UPF0147 protein Ta0600
A
89Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)Mutation(s): 0 
Find proteins for Q9HKJ8 (Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165))
Go to UniProtKB:  Q9HKJ8
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.178 
  • R-Value Work: 0.147 
  • Space Group: P 65
Unit Cell:
Length (Å)Angle (°)
a = 50.584α = 90.00
b = 50.584β = 90.00
c = 59.283γ = 120.00
Software Package:
Software NamePurpose
REFMACrefinement
SHELXEmodel building
HKL-3000phasing
RESOLVEphasing
SOLVEphasing
SCALEPACKdata scaling
SHELXDphasing
DENZOdata reduction
CCP4phasing
MLPHAREphasing
DMphasing
HKL-3000data reduction
HKL-3000data scaling
Cootmodel building
PDB_EXTRACTdata extraction
Omodel building
SBC-Collectdata collection
ARP/wARPmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2007-09-11
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2017-10-25
    Type: Refinement description