2QIP

Crystal structure of a protein of unknown function VPA0982 from Vibrio parahaemolyticus RIMD 2210633


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.48 Å
  • R-Value Free: 0.183 
  • R-Value Work: 0.162 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

The crystal structure of a protein of unknown function, VPA0982 from Vibrio parahaemolyticus RIMD 2210633.

Tan, K.Duggan, E.Moy, S.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Protein of unknown function VPA0982
A
165Vibrio parahaemolyticusMutation(s): 0 
Find proteins for Q9AF14 (Vibrio parahaemolyticus)
Go to UniProtKB:  Q9AF14
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.48 Å
  • R-Value Free: 0.183 
  • R-Value Work: 0.162 
  • Space Group: I 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 62.207α = 90.00
b = 75.034β = 90.00
c = 80.418γ = 90.00
Software Package:
Software NamePurpose
MLPHAREphasing
HKL-3000data scaling
HKL-3000data reduction
REFMACrefinement
HKL-3000phasing
HKL-3000data collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2007-07-24
    Type: Initial release
  • Version 1.1: 2008-05-01
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Source and taxonomy, Version format compliance