2PVA

OXIDIZED PENICILLIN V ACYLASE FROM B. SPHAERICUS


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.245 
  • R-Value Work: 0.196 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Penicillin V acylase crystal structure reveals new Ntn-hydrolase family members.

Suresh, C.G.Pundle, A.V.SivaRaman, H.Rao, K.N.Brannigan, J.A.McVey, C.E.Verma, C.S.Dauter, Z.Dodson, E.J.Dodson, G.G.

(1999) Nat.Struct.Mol.Biol. 6: 414-416


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
PENICILLIN V ACYLASE
A, B, C, D
345Lysinibacillus sphaericusMutation(s): 0 
EC: 3.5.1.11
Find proteins for P12256 (Lysinibacillus sphaericus)
Go to UniProtKB:  P12256
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
DTD
Query on DTD

Download SDF File 
Download CCD File 
A, B, C, D
DITHIANE DIOL
C4 H8 O2 S2
YPGMOWHXEQDBBV-IMJSIDKUSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
OCS
Query on OCS
A, B, C, D
L-PEPTIDE LINKINGC3 H7 N O5 SCYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.245 
  • R-Value Work: 0.196 
  • Space Group: P 65
Unit Cell:
Length (Å)Angle (°)
a = 208.400α = 90.00
b = 208.400β = 90.00
c = 96.200γ = 120.00
Software Package:
Software NamePurpose
DENZOdata reduction
MLPHAREphasing
REFMACrefinement
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2000-07-26
    Type: Initial release
  • Version 1.1: 2008-04-26
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance
  • Version 1.3: 2018-07-11
    Type: Data collection, Database references