2POB

PPARgamma Ligand binding domain complexed with a farglitazar analogue gw4709


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.225 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Cocrystal structure guided array synthesis of PPARgamma inverse agonists

Trump, R.P.Cobb, J.E.Shearer, B.G.Lambert, M.H.Nolte, R.T.Willson, T.M.Buckholtz, R.G.Zhao, S.M.Leesnitzer, L.M.Iannone, M.A.Pearce, K.H.Billin, A.N.Hoekstra, W.J.

(2007) BIOORG.MED.CHEM.LETT. 17: 3916-3920

  • DOI: 10.1016/j.bmcl.2007.04.111

  • PubMed Abstract: 
  • PPARgamma-activating thiazolidinediones and carboxylic acids such as farglitazar exert their anti-diabetic effects in part in PPARgamma rich adipose. Both pro- and anti-adipogenic PPARgamma ligands promote glucose and lipid lowering in animal models ...

    PPARgamma-activating thiazolidinediones and carboxylic acids such as farglitazar exert their anti-diabetic effects in part in PPARgamma rich adipose. Both pro- and anti-adipogenic PPARgamma ligands promote glucose and lipid lowering in animal models of diabetes. Herein, we disclose representatives of an array of 160 farglitazar analogues with atypical inverse agonism of PPARgamma in mature adipocytes.


    Organizational Affiliation

    Drug Discovery, GlaxoSmithKline, Research Triangle Park, NC 27709, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Peroxisome proliferator-activated receptor gamma
A, B
272Homo sapiensMutation(s): 0 
Gene Names: PPARG (NR1C3)
Find proteins for P37231 (Homo sapiens)
Go to Gene View: PPARG
Go to UniProtKB:  P37231
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
B
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
GW4
Query on GW4

Download SDF File 
Download CCD File 
A
N-[(2S)-2-[(2-BENZOYLPHENYL)AMINO]-3-{4-[2-(5-METHYL-2-PHENYL-1,3-OXAZOL-4-YL)ETHOXY]PHENYL}PROPYL]ACETAMIDE
C36 H35 N3 O4
WCJXONGEWJNZQV-PMERELPUSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
GW4Ki: 138 nM (100) BINDINGDB
GW4IC50: 1585 nM (100) BINDINGDB
GW4EC50: 1000 nM (100) BINDINGDB
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.225 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 92.916α = 90.00
b = 62.006β = 101.94
c = 118.172γ = 90.00
Software Package:
Software NamePurpose
MAR345data collection
AMoREphasing
HKL-2000data reduction
HKL-2000data scaling
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2007-04-26 
  • Released Date: 2008-03-18 
  • Deposition Author(s): Nolte, R.T.

Revision History 

  • Version 1.0: 2008-03-18
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Non-polymer description, Version format compliance
  • Version 1.2: 2014-09-10
    Type: Database references
  • Version 1.3: 2017-10-18
    Type: Refinement description