2PMJ

Crystal structure of the complex formed between phospholipase A2 and 1, 2 benzopyrone at 2.4 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.200 
  • R-Value Work: 0.177 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Crystal structure of the complex formed between phospholipase A2 and 1, 2 benzopyrone at 2.4 A resolution

Kumar, S.Singh, N.Sharma, S.Kaur, P.Singh, T.P.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Phospholipase A2 VRV-PL-VIIIa
A
121Daboia russeliiMutation(s): 0 
EC: 3.1.1.4
Find proteins for P59071 (Daboia russelii)
Go to UniProtKB:  P59071
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CCN
Query on CCN

Download SDF File 
Download CCD File 
A
ACETONITRILE
C2 H3 N
WEVYAHXRMPXWCK-UHFFFAOYSA-N
 Ligand Interaction
COU
Query on COU

Download SDF File 
Download CCD File 
A
COUMARIN
2H-1-BENZOPYRAN-2-ONE
C9 H6 O2
ZYGHJZDHTFUPRJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.200 
  • R-Value Work: 0.177 
  • Space Group: P 43
Unit Cell:
Length (Å)Angle (°)
a = 53.350α = 90.00
b = 53.350β = 90.00
c = 48.430γ = 90.00
Software Package:
Software NamePurpose
DENZOdata reduction
MAR345data collection
CNSrefinement
SCALEPACKdata scaling
AMoREphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2007-05-01
    Type: Initial release
  • Version 1.1: 2008-05-01
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance
  • Version 1.3: 2017-10-18
    Type: Refinement description