2PLO | pdb_00002plo

D-(GTATACC) low temperature (100K)

• PDB DOI: https://doi.org/10.2210/pdb2PLO/pdb
• NAKB: 2PLO

• Classification: DNA
• Mutation(s): No 


• Deposited: 2007-04-20 Released: 2008-05-27 
• Deposition Author(s): Prange, T., Lecouvey, M., Migianu-Griffoni, E.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.40 Å
• R-Value Work: 
  0.170 (Depositor), 0.180 (DCC) 
• R-Value Observed: 
  0.177 (Depositor) 

Starting Model: experimental

Literature

Adaptation of macromolecular crystals to extreme conditions: high pressure versus low temperature

Prange, T., Girard, E., Kahn, R., Lecouvey, M., Migianu-Griffoni, E., Mezouar, M., Fourme, R.

To be published.

Biological Assembly 1  

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 4.88 kDa 
• Atom Count: 393 
• Modeled Residue Count: 16 
• Deposited Residue Count: 16 
• Unique nucleic acid chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Length	Organism	Image
5'-D(*DGP*DGP*DTP*DAP*DTP*DAP*DCP*DC)-3'	A, B	8	N/A

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NA	C [auth A]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.40 Å
• R-Value Work:  0.170 (Depositor), 0.180 (DCC) 
• R-Value Observed: 0.177 (Depositor) 

Space Group: P 6₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 44.783	α = 90
b = 44.783	β = 90
c = 41.393	γ = 120

Software Package:

Software Name	Purpose
SHELXL-97	refinement
ADSC	data collection
HKL-2000	data reduction
SCALEPACK	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-05-27 
Deposition Author(s): Prange, T., Lecouvey, M., Migianu-Griffoni, E.

Revision History  

• Version 1.0: 2008-05-27
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2023-08-30
  Changes: Data collection, Database references, Derived calculations, Refinement description