2PLA

Crystal structure of human glycerol-3-phosphate dehydrogenase 1-like protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.51 Å
  • R-Value Free: 0.212 
  • R-Value Work: 0.175 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Crystal structure of human glycerol-3-phosphate dehydrogenase 1-like protein.

Uppenberg, J.Smee, C.Hozjan, V.Kavanagh, K.Bunkoczi, G.Papagrigoriou, E.Pike, A.C.W.Ugochukwu, E.Umeano, C.von Delft, F.Weigelt, J.Arrowsmith, C.H.Edwards, A.Sundstrom, M.Oppermann, U.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Glycerol-3-phosphate dehydrogenase 1-like protein
A, B
349Homo sapiensMutation(s): 0 
Gene Names: GPD1L (KIAA0089)
EC: 1.1.1.8
Find proteins for Q8N335 (Homo sapiens)
Go to Gene View: GPD1L
Go to UniProtKB:  Q8N335
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

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Download CCD File 
A, B
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
CL
Query on CL

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Download CCD File 
B
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
NAD
Query on NAD

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Download CCD File 
A, B
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.51 Å
  • R-Value Free: 0.212 
  • R-Value Work: 0.175 
  • Space Group: P 31 2 1
Unit Cell:
Length (Å)Angle (°)
a = 139.100α = 90.00
b = 139.100β = 90.00
c = 109.620γ = 120.00
Software Package:
Software NamePurpose
REFMACrefinement
MAR345data collection
PHASERphasing
XDSdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2007-05-01
    Type: Initial release
  • Version 1.1: 2008-05-01
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Advisory, Version format compliance
  • Version 1.3: 2017-10-18
    Type: Refinement description