2PG3

Crystal structure of a Queuosine biosynthesis protein queC (ECA1155) from Erwinia carotovora subsp. atroseptica SCRI1043 at 2.40 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.223 
  • R-Value Work: 0.186 

wwPDB Validation 3D Report Full Report


This is version 1.5 of the entry. See complete history

Literature

Crystal structure of hypothetical protein (YP_049261.1) from Erwinia carotovora subsp. atroseptica SCRI1043 at 2.40 A resolution

Joint Center for Structural Genomics (JCSG)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Queuosine biosynthesis protein queC
A
232Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)Mutation(s): 0 
Gene Names: queC
EC: 6.3.4.20
Find proteins for Q6D820 (Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672))
Go to UniProtKB:  Q6D820
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 78.154α = 90.00
b = 78.154β = 90.00
c = 77.755γ = 90.00
Software Package:
Software NamePurpose
CCP4data scaling
SOLVEphasing
REFMACrefinement
MOSFLMdata reduction
MAR345data collection
SCALAdata scaling
MolProbitymodel building
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2007-04-24
    Type: Initial release
  • Version 1.1: 2008-05-01
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Advisory, Derived calculations, Version format compliance
  • Version 1.3: 2014-12-24
    Type: Structure summary
  • Version 1.4: 2017-10-18
    Type: Refinement description
  • Version 1.5: 2017-10-25
    Type: Author supporting evidence