2PEH

Crystal structure of the UHM domain of human SPF45 in complex with SF3b155-ULM5

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.11 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.208 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history. 

Literature

U2AF-homology motif interactions are required for alternative splicing regulation by SPF45.

Corsini, L., Bonna, S., Basquin, J., Hothorn, M., Scheffzek, K., Valcarcel, J., Sattler, M.

(2007) Nat.Struct.Mol.Biol. 14: 620-629

  • DOI: 10.1038/nsmb1260
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 

    • The U2AF-homology motif (UHM) mediates protein-protein interactions between factors involved in constitutive RNA splicing. Here we report that the splicing factor SPF45 regulates alternative splicing of the apoptosis regulatory gene FAS (also called ...

    The U2AF-homology motif (UHM) mediates protein-protein interactions between factors involved in constitutive RNA splicing. Here we report that the splicing factor SPF45 regulates alternative splicing of the apoptosis regulatory gene FAS (also called CD95). The SPF45 UHM is necessary for this activity and binds UHM-ligand motifs (ULMs) present in the 3' splice site-recognizing factors U2AF65, SF1 and SF3b155. We describe a 2.1-A crystal structure of SPF45-UHM in complex with a ULM peptide from SF3b155. Features distinct from those of previously described UHM-ULM structures allowed the design of mutations in the SPF45 UHM that selectively impair binding to individual ULMs. Splicing assays using the ULM-selective SPF45 variants demonstrate that individual UHM-ULM interactions are required for FAS splicing regulation by SPF45 in vivo. Our data suggest that networks of UHM-ULM interactions are involved in regulating alternative splicing.

    Organizational Affiliation: 

    European Molecular Biology Laboratory (EMBL), Meyerhofstr. 1, D-69117 Heidelberg, Germany.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Splicing factor 45
A, B
105Homo sapiensMutation(s): 0 
Gene Names: RBM17 (SPF45)
Find proteins for Q96I25 (Homo sapiens)
Go to Gene View: RBM17
Go to UniProtKB:  Q96I25
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Splicing factor 3B subunit 1
C, D
10Homo sapiensMutation(s): 0 
Gene Names: SF3B1 (SAP155)
Find proteins for O75533 (Homo sapiens)
Go to Gene View: SF3B1
Go to UniProtKB:  O75533
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.11 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.208 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 45.920α = 90.00
b = 66.380β = 90.00
c = 72.770γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
PHASERphasing
MAR345dtbdata collection
XDSdata scaling
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots


View more in-depth experimental data

Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2007-06-26
    Type: Initial release
  • Version 1.1: 2008-05-01
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Advisory, Version format compliance