2P62 | pdb_00002p62

Crystal structure of hypothetical protein PH0156 from Pyrococcus horikoshii OT3

PDB DOI: https://doi.org/10.2210/pdb2P62/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Pyrococcus horikoshii OT3
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2007-03-16 Released: 2007-04-17
Deposition Author(s): Fu, Z.-Q., Chen, L., Zhu, J., Swindell, J.T., Ebihara, A., Shinkai, A., Kuramitsu, S., Yokoyama, S., Chrzas, J., Rose, J.P., Wang, B.-C., Southeast Collaboratory for Structural Genomics (SECSG), RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.244 (Depositor), 0.235 (DCC)
R-Value Work:
0.213 (Depositor), 0.210 (DCC)

wwPDB Validation 3D Report Full Report

Validation slider image for 2P62

This is version 1.5 of the entry. See complete history.

Literature

Crystal structure of hypothetical protein PH0156 from Pyrococcus horikoshii OT3

Fu, Z.-Q., Chen, L., Zhu, J., Swindell, J.T., Ebihara, A., Shinkai, A., Kuramitsu, S., Yokoyama, S., Chrzas, J., Rose, J.P., Wang, B.-C.

To be published.

Macromolecule Content

Total Structure Weight: 55.26 kDa
Atom Count: 4,019
Modeled Residue Count: 482
Deposited Residue Count: 482
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical protein PH0156	A, B	241	Pyrococcus horikoshii OT3	Mutation(s): 0 Gene Names: PH0156
UniProt
Find proteins for O57895 (Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)) Explore O57895 Go to UniProtKB: O57895
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O57895
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.244 (Depositor), 0.235 (DCC)
R-Value Work: 0.213 (Depositor), 0.210 (DCC)

Space Group: P 6₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 122.071	α = 90
b = 122.071	β = 90
c = 109.067	γ = 120

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
CNS	refinement
PDB_EXTRACT	data extraction
SERGUI	data collection
HKL-2000	data reduction
SGXPRO	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2007-04-17

Deposition Author(s):

Southeast Collaboratory for Structural Genomics (SECSG)

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2007-04-17
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance
Version 1.3: 2017-10-18
Changes: Refinement description
Version 1.4: 2018-01-24
Changes: Database references, Structure summary
Version 1.5: 2024-10-16
Changes: Data collection, Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.