2P5Y

Crystal structure of Thermus thermophilus HB8 UDP-glucose 4-epimerase complex with NAD


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.92 Å
  • R-Value Free: 0.207 
  • R-Value Work: 0.191 

wwPDB Validation 3D Report Full Report


This is version 1.4 of the entry. See complete history

Literature

Crystal structure of Thermus thermophilus HB8 UDP-glucose 4-epimerase complex with NAD

Fu, Z.-Q.Chen, L.Ebihara, A.Shinkai, A.Kuramitsu, S.Yokoyama, S.Zhu, J.Swindell, J.T.Chrzas, J.Rose, J.P.Wang, B.-C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
UDP-glucose 4-epimerase
A
311Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Find proteins for Q5SKQ2 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SKQ2
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAD
Query on NAD

Download SDF File 
Download CCD File 
A
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.92 Å
  • R-Value Free: 0.207 
  • R-Value Work: 0.191 
  • Space Group: P 41 3 2
Unit Cell:
Length (Å)Angle (°)
a = 135.667α = 90.00
b = 135.667β = 90.00
c = 135.667γ = 90.00
Software Package:
Software NamePurpose
DENZOdata reduction
SERGUIdata collection
HKL-2000data reduction
REFMACrefinement
PDB_EXTRACTdata extraction
EPMRphasing
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2007-04-17
    Type: Initial release
  • Version 1.1: 2008-05-01
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance
  • Version 1.3: 2017-10-18
    Type: Refinement description
  • Version 1.4: 2018-01-24
    Type: Database references, Structure summary