2P4X | pdb_00002p4x

Crystal Structure of Atp12 from Paracoccus Denitrificans

• PDB DOI: https://doi.org/10.2210/pdb2P4X/pdb

• Classification: CHAPERONE
• Organism(s): Paracoccus denitrificans PD1222
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2007-03-13 Released: 2008-03-11 
• Deposition Author(s): Ludlam, A.V., Brunzelle, J.S., Gatti, D.L., Ackerman, S.H.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free: 
  0.230 (Depositor), 0.230 (DCC) 
• R-Value Work: 
  0.187 (Depositor), 0.190 (DCC) 
• R-Value Observed: 
  0.187 (Depositor) 

Literature

Crystal Structure of Atp12 from Paracoccus Denitrificans

Ludlam, A.V., Brunzelle, J.S., Pribyl, T., Gatti, D.L., Ackerman, S.H.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 52.51 kDa 
• Atom Count: 3,975 
• Modeled Residue Count: 466 
• Deposited Residue Count: 478 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP12 ATPase	A, B	239	Paracoccus denitrificans PD1222	Mutation(s): 0  Gene Names: Pden_0792
UniProt
Find proteins for A1B060 (Paracoccus denitrificans (strain Pd 1222)) Explore A1B060  Go to UniProtKB:  A1B060

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free:  0.230 (Depositor), 0.230 (DCC) 
• R-Value Work:  0.187 (Depositor), 0.190 (DCC) 
• R-Value Observed: 0.187 (Depositor) 

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 42.854	α = 73.87
b = 50.632	β = 74.19
c = 67.581	γ = 89.78

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data collection
HKL-2000	data reduction
HKL-2000	data scaling
SOLVE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-03-11 
Deposition Author(s): Ludlam, A.V., Brunzelle, J.S., Gatti, D.L., Ackerman, S.H.

Revision History  

• Version 1.0: 2008-03-11
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Source and taxonomy, Version format compliance
• Version 1.2: 2024-02-21
  Changes: Data collection, Database references