Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

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Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 42515.62 
• Atom Count: 2731 
• Residue Count: 365 
• Unique protein chains: 1

2P33

Synthesis and SAR of Aminopyrimidines as Novel c-Jun N-Terminal Kinase (JNK) Inhibitors

• DOI: 10.2210/pdb2P33/pdb

• Classification: TRANSFERASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli


• Deposited: 2007-03-08 Released: 2007-06-19 
• Deposition Author(s): Ceska, T.A., Platt, A., Fortunato, M., Dickson, K.M., Sharpe, A.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.4 Å
• R-Value Free: 0.304 
• R-Value Work: 0.253 

Literature

Synthesis and SAR of aminopyrimidines as novel c-Jun N-terminal kinase (JNK) inhibitors

Alam, M., Beevers, R.E., Ceska, T., Davenport, R.J., Dickson, K.M., Fortunato, M., Gowers, L., Haughan, A.F., James, L.A., Jones, M.W., Kinsella, N., Lowe, C., Meissner, J.W., Nicolas, A.L., Perry, B.G., Phillips, D.J., Pitt, W.R., Platt, A., Ratcliffe, A.J., Sharpe, A., Tait, L.J.

(2007) Bioorg.Med.Chem.Lett. 17: 3463-3467

• PubMed: 17459703 
• DOI: 10.1016/j.bmcl.2007.03.078


• PubMed Abstract: 
  

The development of a series of novel aminopyrimidines as inhibitors of c-Jun N-terminal kinases is described. The synthesis, in vitro inhibitory values for JNK1, JNK2 and CDK2, and the in vitro inhibitory value for a c-Jun cellular assay are discussed.

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Organizational Affiliation: 

UCB, Granta Park, Great Abington, Cambridge CB21 6GS, UK.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
c-Jun N-terminal kinase 3	A	365	Homo sapiens	Mutation(s): 0  Gene Names: MAPK10 (JNK3, JNK3A, PRKM10, SAPK1B) EC: 2.7.11.24
Find proteins for P53779 (Homo sapiens) Go to Gene View: MAPK10 Go to UniProtKB:  P53779

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions
J07	A	4-{[5-chloro-4-(1H-indol-3-yl)pyrimidin-2-yl]amino}-N-ethylpiperidine-1-carboxamide C20 H23 Cl N6 O ARMFMDYRYOKSOW-UHFFFAOYSA-N

External Ligand Annotations
ID	Binding Affinity (Sequence Identity %)
J07	IC50: 13 - 57 nM (93) BINDINGDB
J07	IC50: 57 nM BINDINGMOAD
J07	IC50: 57 nM PDBBIND

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.4 Å
• R-Value Free: 0.304 
• R-Value Work: 0.253 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length (Å)	Angle (°)
a = 51.820	α = 90.00
b = 71.520	β = 90.00
c = 107.360	γ = 90.00

Software Package:

Software Name	Purpose
MAR345dtb	data collection
DENZO	data reduction
CNX	phasing
SCALEPACK	data scaling
CNX	refinement

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2007-03-08 
• Released Date: 2007-06-19 
• Deposition Author(s): Ceska, T.A., Platt, A., Fortunato, M., Dickson, K.M., Sharpe, A.

Revision History 

• Version 1.0: 2007-06-19
  Type: Initial release
• Version 1.1: 2008-05-01
  Type: Version format compliance
• Version 1.2: 2011-07-13
  Type: Version format compliance
• Version 1.3: 2017-10-18
  Type: Refinement description