Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 42.52 kDa 
• Atom Count: 2775 
• Residue Count: 332 
• Unique protein chains: 1

2P33

Synthesis and SAR of Aminopyrimidines as Novel c-Jun N-Terminal Kinase (JNK) Inhibitors

• DOI: 10.2210/pdb2P33/pdb

• Classification: TRANSFERASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2007-03-08 Released: 2007-06-19 
• Deposition Author(s): Ceska, T.A., Platt, A., Fortunato, M., Dickson, K.M., Sharpe, A.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 0.304 
• R-Value Work: 0.253 

Literature

Synthesis and SAR of aminopyrimidines as novel c-Jun N-terminal kinase (JNK) inhibitors

Alam, M., Beevers, R.E., Ceska, T., Davenport, R.J., Dickson, K.M., Fortunato, M., Gowers, L., Haughan, A.F., James, L.A., Jones, M.W., Kinsella, N., Lowe, C., Meissner, J.W., Nicolas, A.L., Perry, B.G., Phillips, D.J., Pitt, W.R., Platt, A., Ratcliffe, A.J., Sharpe, A., Tait, L.J.

(2007) Bioorg Med Chem Lett 17: 3463-3467

• PubMed: 17459703 
• DOI: 10.1016/j.bmcl.2007.03.078
• Primary Citation of Related Structures:  
  2P33


• PubMed Abstract: 
  

The development of a series of novel aminopyrimidines as inhibitors of c-Jun N-terminal kinases is described. The synthesis, in vitro inhibitory values for JNK1, JNK2 and CDK2, and the in vitro inhibitory value for a c-Jun cellular assay are discussed.

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Organizational Affiliation: 

UCB, Granta Park, Great Abington, Cambridge CB21 6GS, UK.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
c-Jun N-terminal kinase 3	A	365	Homo sapiens	Mutation(s): 0  Gene Names: MAPK10, JNK3, JNK3A, PRKM10, SAPK1B EC: 2.7.11.24
Find proteins for P53779 (Homo sapiens) Explore P53779  Go to UniProtKB:  P53779
NIH Common Fund Data Resources
PHAROS:  P53779 GTEx:  ENSG00000109339

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
J07	A	4-{[5-chloro-4-(1H-indol-3-yl)pyrimidin-2-yl]amino}-N-ethylpiperidine-1-carboxamide C20 H23 Cl N6 O ARMFMDYRYOKSOW-UHFFFAOYSA-N

External Ligand Annotations
ID	Binding Affinity (Sequence Identity %)
J07	IC50:  57   nM  BindingDB
J07	IC50 :  57   nM  PDBBind
J07	IC50:  25   nM  BindingDB
J07	IC50:  57   nM  Binding MOAD
J07	IC50:  13   nM  BindingDB

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 0.304 
• R-Value Work: 0.253 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 51.82	α = 90
b = 71.52	β = 90
c = 107.36	γ = 90

Software Package:

Software Name	Purpose
CNX	refinement
MAR345dtb	data collection
DENZO	data reduction
SCALEPACK	data scaling
CNX	phasing

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2007-03-08 
• Released Date: 2007-06-19 
Deposition Author(s): Ceska, T.A., Platt, A., Fortunato, M., Dickson, K.M., Sharpe, A.

Revision History 

• Version 1.0: 2007-06-19
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2017-10-18
  Changes: Refinement description