Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

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Global Symmetry: Dihedral - D4  (3D View)
Global Stoichiometry: Homo 8-mer - A8 

Biological assembly 1 assigned by authors and generated by PISA,PQS (software)

Macromolecule Content

• Total Structure Weight: 359895.53 
• Atom Count: 25279 
• Residue Count: 3224 
• Unique protein chains: 1

2OX4

Crystal structure of putative dehydratase from Zymomonas mobilis ZM4

• DOI: 10.2210/pdb2OX4/pdb

• Classification: ISOMERASE
• Organism(s): Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
• Expression System: Escherichia coli BL21(DE3)


• Deposited: 2007-02-19 Released: 2007-03-06 
• Deposition Author(s): Patskovsky, Y., Toro, R., Sauder, J.M., Freeman, J.C., Bain, K., Gheyi, T., Wasserman, S.R., Smith, D., Gerlt, J., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.8 Å
• R-Value Free: 0.186 
• R-Value Work: 0.144 

Literature

Crystal Structure of Putative Dehydratase from Zymomonas Mobilis Zm4

Patskovsky, Y., Toro, R., Sauder, J.M., Freeman, J.C., Bain, K., Gheyi, T., Wasserman, S.R., Smith, D., Gerlt, J., Burley, S.K., Almo, S.C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Putative mandelate racemase	A, B, C, D, E, F, G, H	403	Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)	Mutation(s): 0
Find proteins for Q5NN22 (Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)) Go to UniProtKB:  Q5NN22

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions
CL	B, D, F, G	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M
GOL	A, B, C, D, E, F, G, H	GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N
MG	A, B, C, D, E, F, G, H	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.8 Å
• R-Value Free: 0.186 
• R-Value Work: 0.144 
• Space Group: P 2₁ 2₁ 2

Unit Cell:

Length (Å)	Angle (°)
a = 190.178	α = 90.00
b = 190.409	β = 90.00
c = 85.922	γ = 90.00

Software Package:

Software Name	Purpose
MAR345	data collection
HKL-2000	data scaling
REFMAC	refinement
MOLREP	phasing
HKL-2000	data reduction

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2007-02-19 
• Released Date: 2007-03-06 
• Deposition Author(s): Patskovsky, Y., Toro, R., Sauder, J.M., Freeman, J.C., Bain, K., Gheyi, T., Wasserman, S.R., Smith, D., Gerlt, J., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History 

• Version 1.0: 2007-03-06
  Type: Initial release
• Version 1.1: 2007-10-16
  Type: Version format compliance
• Version 1.2: 2011-07-13
  Type: Derived calculations, Version format compliance
• Version 1.3: 2017-10-18
  Type: Refinement description
• Version 1.4: 2018-11-14
  Type: Data collection, Structure summary