2OS1

Structures of actinonin bound peptide deformylases from E. faecalis and S. pyogenes


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.198 
  • R-Value Work: 0.186 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structures of actinonin bound peptide deformylases from E. faecalis and S. pyogenes

Kim, E.E.Kim, K.-H.Moon, J.H.Choi, K.Lee, H.K.Park, H.S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Peptide deformylase
A
188Enterococcus faecalis (strain ATCC 700802 / V583)Mutation(s): 0 
Gene Names: def
EC: 3.5.1.88
Find proteins for Q82ZJ0 (Enterococcus faecalis (strain ATCC 700802 / V583))
Go to UniProtKB:  Q82ZJ0
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
BB2
Query on BB2

Download SDF File 
Download CCD File 
A
ACTINONIN
2-[(FORMYL-HYDROXY-AMINO)-METHYL]-HEPTANOIC ACID [1-(2-HYDROXYMETHYL-PYRROLIDINE-1-CARBONYL)-2-METHYL-PROPYL]-AMIDE
C19 H35 N3 O5
XJLATMLVMSFZBN-VYDXJSESSA-N
 Ligand Interaction
NI
Query on NI

Download SDF File 
Download CCD File 
A
NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.198 
  • R-Value Work: 0.186 
  • Space Group: P 43
Unit Cell:
Length (Å)Angle (°)
a = 67.999α = 90.00
b = 67.999β = 90.00
c = 41.127γ = 90.00
Software Package:
Software NamePurpose
CNSphasing
HKL-2000data reduction
CNSrefinement
SCALEPACKdata scaling
HKL-2000data collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2008-03-04
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance