2OQP | pdb_00002oqp

Solution structure of human interleukin-21


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 64 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

Validation slider image for 2OQP

This is version 1.5 of the entry. See complete history

Literature

The existence of multiple conformers of interleukin-21 directs engineering of a superpotent analogue.

Bondensgaard, K.Breinholt, J.Madsen, D.Omkvist, D.H.Kang, L.Worsaae, A.Becker, P.Schiodt, C.B.Hjorth, S.A.

(2007) J Biological Chem 282: 23326-23336

  • DOI: https://doi.org/10.1074/jbc.M701313200
  • Primary Citation Related Structures: 
    2OQP

  • PubMed Abstract: 

    The high resolution three-dimensional structure of human interleukin (hIL)-21 has been resolved by heteronuclear NMR spectroscopy. Overall, the hIL-21 structure is dominated by a well defined central four-helical bundle, arranged in an up-up-down-down topology, as observed for other cytokines. A segment of the hIL-21 molecule that includes the third helical segment, helix C, is observed to exist in two distinct and interchangeable states. In one conformer, the helix C segment is presented in a regular, alpha-helical conformation, whereas in the other conformer, this segment is largely disordered. A structure-based sequence alignment of hIL-21 with receptor complexes of the related cytokines, interleukin-2 and -4, implied that this particular segment is involved in receptor binding. An hIL-21 analog was designed to stabilize the region around helix C through the introduction of a segment grafted from hIL-4. This novel hIL-21 analog was demonstrated to exhibit a 10-fold increase in potency in a cellular assay.


  • Organizational Affiliation
    • Novo Nordisk A/S, Biopharmaceuticals Research Unit, DK-2760 Måløv, Denmark. kbaa@novonordisk.com

Macromolecule Content 

  • Total Structure Weight: 15.62 kDa 
  • Atom Count: 1,091 
  • Modeled Residue Count: 134 
  • Deposited Residue Count: 134 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Interleukin-21134Homo sapiensMutation(s): 0 
Gene Names: IL21
UniProt & NIH Common Fund Data Resources
Find proteins for Q9HBE4 (Homo sapiens)
Explore Q9HBE4 
Go to UniProtKB:  Q9HBE4
PHAROS:  Q9HBE4
GTEx:  ENSG00000138684 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9HBE4
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 64 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2007-06-19
    Type: Initial release
  • Version 1.1: 2007-10-08
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2022-03-16
    Changes: Data collection, Database references, Derived calculations
  • Version 1.4: 2023-12-27
    Changes: Data collection
  • Version 1.5: 2024-10-09
    Changes: Structure summary