2OBY

Crystal structure of Human P53 inducible oxidoreductase (TP53I3,PIG3)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.220 
  • R-Value Observed: 0.222 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.4 of the entry. See complete history


Literature

Crystal structure of human P53 inducible oxidoreductase (TP53I3, PIG3)

Porte, S.Valencia, E.Farres, J.Fita, I.Pike, A.C.W.Shafqat, N.Debreczeni, J.Johansson, C.Haroniti, A.Gileadi, O.Arrowsmith, C.H.Edwards, A.Weigelt, J.Sundstrom, M.von Delft, F.Oppermann, U.Pares, X.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Putative quinone oxidoreductaseA, B, C, D, E338Homo sapiensMutation(s): 0 
Gene Names: TP53I3PIG3
EC: 1 (PDB Primary Data), 1.6.5.5 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for Q53FA7 (Homo sapiens)
Explore Q53FA7 
Go to UniProtKB:  Q53FA7
PHAROS:  Q53FA7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ53FA7
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAP
Query on NAP

Download Ideal Coordinates CCD File 
F [auth A],
G [auth B],
H [auth C],
I [auth D],
J [auth E]
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.220 
  • R-Value Observed: 0.222 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 68.354α = 90
b = 184.359β = 90
c = 318.047γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
MAR345data collection
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2007-01-30
    Type: Initial release
  • Version 1.1: 2008-05-01
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Advisory, Refinement description, Version format compliance
  • Version 1.3: 2017-10-18
    Changes: Refinement description
  • Version 1.4: 2018-01-31
    Changes: Database references, Structure summary