2OAD | pdb_00002oad

Structure of Glutathione-S-Transferase C169A Mutant

• PDB DOI: https://doi.org/10.2210/pdb2OAD/pdb

• Classification: TRANSFERASE
• Organism(s): Mus musculus
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2006-12-15 Released: 2007-01-23 
• Deposition Author(s): Kyrieleis, O.J., McManus, G., Mantle, T.J., Khan, A.R.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free: 
  0.264 (Depositor), 0.214 (DCC) 
• R-Value Work: 
  0.216 (Depositor), 0.211 (DCC) 
• R-Value Observed: 
  0.220 (Depositor) 

Starting Model: experimental

Literature

Structural and Kinetic Analyses of Glutathione S-Transferase Mutations

Kyrieleis, O.J., McManus, G., Mantle, T.J., Khan, A.R.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 47.83 kDa 
• Atom Count: 3,717 
• Modeled Residue Count: 418 
• Deposited Residue Count: 418 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glutathione S-transferase P 1	A, B	209	Mus musculus	Mutation(s): 1  Gene Names: Gstp1, Gstpib EC: 2.5.1.18
UniProt
Find proteins for P19157 (Mus musculus) Explore P19157  Go to UniProtKB:  P19157

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GTB	C [auth A], D [auth B]	S-(P-NITROBENZYL)GLUTATHIONE C17 H22 N4 O8 S OAWORKDPTSAMBZ-STQMWFEESA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free:  0.264 (Depositor), 0.214 (DCC) 
• R-Value Work:  0.216 (Depositor), 0.211 (DCC) 
• R-Value Observed: 0.220 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 56.631	α = 90
b = 77.031	β = 90
c = 101.609	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
AMoRE	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
CrystalClear	data collection
HKL-2000	data reduction
XSCALE	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-01-23 
Deposition Author(s): Kyrieleis, O.J., McManus, G., Mantle, T.J., Khan, A.R.

Revision History  

• Version 1.0: 2007-01-23
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2019-07-24
  Changes: Advisory, Data collection, Refinement description
• Version 1.4: 2021-10-20
  Changes: Advisory, Database references, Derived calculations
• Version 1.5: 2023-08-30
  Changes: Data collection, Refinement description