2O5N
Crystal structure of a Viral Glycoprotein
- PDB DOI: https://doi.org/10.2210/pdb2O5N/pdb
- Classification: VIRAL PROTEIN
- Organism(s): Murid betaherpesvirus 1
- Expression System: Drosophila melanogaster
- Mutation(s): No 
- Deposited: 2006-12-06 Released: 2007-09-25 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.279 
- R-Value Work: 0.230 
- R-Value Observed: 0.233 
This is version 3.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
MuHV1gpm153 | 319 | Murid betaherpesvirus 1 | Mutation(s): 0  Gene Names: MuHV1gpm153 | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | E [auth B] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Modified Residues 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.279 
- R-Value Work: 0.230 
- R-Value Observed: 0.233 
- Space Group: P 1 21 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 61.969 | α = 90 |
b = 78.178 | β = 90.43 |
c = 62.726 | γ = 90 |
Software Name | Purpose |
---|---|
DENZO | data reduction |
SCALEPACK | data scaling |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
CBASS | data collection |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
SOLVE | phasing |
Entry History 
Deposition Data
- Released Date: 2007-09-25  Deposition Author(s): Mans, J., Natarajan, K., Robinson, H., Margulies, D.H.
Revision History (Full details and data files)
- Version 1.0: 2007-09-25
Type: Initial release - Version 1.1: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 1.2: 2017-10-18
Changes: Refinement description - Version 2.0: 2020-05-13
Changes: Advisory, Atomic model, Data collection, Derived calculations, Structure summary - Version 3.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Non-polymer description, Structure summary - Version 3.1: 2023-12-27
Changes: Data collection, Database references, Structure summary