Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

Standalone Viewers  
Protein Workshop | Ligand Explorer

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 42784.80 
• Atom Count: 2824 
• Residue Count: 372 
• Unique protein chains: 1

2O5K

Crystal Structure of GSK3beta in complex with a benzoimidazol inhibitor

• DOI: 10.2210/pdb2O5K/pdb

• Classification: TRANSFERASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21


• Deposited: 2006-12-06 Released: 2007-10-23 
• Deposition Author(s): Shin, D., Lee, S.C., Heo, Y.S., Cho, Y.S., Kim, Y.E., Hyun, Y.L., Cho, J.M., Lee, Y.S., Ro, S.

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.2 Å
• R-Value Free: 0.309 
• R-Value Work: 0.240 

Literature

Design and synthesis of 7-hydroxy-1H-benzoimidazole derivatives as novel inhibitors of glycogen synthase kinase-3beta

Shin, D., Lee, S.C., Heo, Y.S., Lee, W.Y., Cho, Y.S., Kim, Y.E., Hyun, Y.L., Cho, J.M., Lee, Y.S., Ro, S.

(2007) Bioorg.Med.Chem.Lett. 17: 5686-5689

• PubMed: 17764934 
• DOI: 10.1016/j.bmcl.2007.07.056


• PubMed Abstract: 
  

A hydroxy functional group was introduced as the hydrogen bond donor and acceptor at the hinge region of protein kinase in order to develop novel ATP-competitive inhibitors. Several derivatives of 7-hydroxyl-1H-benzoimidazole were designed as inhibitors of glycogen synthase kinase-3beta with the help of ab initio calculations and a docking study. Enzymatic assay and an X-ray complex study showed that these designed compounds were highly potent ATP-competitive inhibitors.

---

Organizational Affiliation: 

CrystalGenomics, Inc., Asan Institute for Life Sciences, 388-1 Pungnap-2dong, Songpa-gu, Seoul 138-736, Republic of Korea.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Glycogen synthase kinase-3 beta	A	372	Homo sapiens	Mutation(s): 0  Gene Names: GSK3B EC: 2.7.11.26
Find proteins for P49841 (Homo sapiens) Go to Gene View: GSK3B Go to UniProtKB:  P49841

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions
HBM	A	2-(2,4-DICHLORO-PHENYL)-7-HYDROXY-1H-BENZOIMIDAZOLE-4-CARBOXYLIC ACID [2-(4-METHANESULFONYLAMINO-PHENYL)-ETHYL]-AMIDE 2-(2,4-DICHLOROPHENYL)-4-HYDROXY-N-(2-{4-[(METHYLSULFONYL)AMINO]PHENYL}ETHYL)-1H-BENZIMIDAZOLE-7-CARBOXAMIDE C23 H20 Cl2 N4 O4 S BFHQTAMNYUCFBP-UHFFFAOYSA-N

External Ligand Annotations
ID	Binding Affinity (Sequence Identity %)
HBM	IC50: 15 nM (100) BINDINGDB
HBM	IC50: 15 nM PDBBIND

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.2 Å
• R-Value Free: 0.309 
• R-Value Work: 0.240 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length (Å)	Angle (°)
a = 70.940	α = 90.00
b = 72.632	β = 90.00
c = 81.795	γ = 90.00

Software Package:

Software Name	Purpose
CNS	refinement
CrystalClear	data collection
AMoRE	phasing
d*TREK	data reduction
d*TREK	data scaling

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2006-12-06 
• Released Date: 2007-10-23 
• Deposition Author(s): Shin, D., Lee, S.C., Heo, Y.S., Cho, Y.S., Kim, Y.E., Hyun, Y.L., Cho, J.M., Lee, Y.S., Ro, S.

Revision History 

• Version 1.0: 2007-10-23
  Type: Initial release
• Version 1.1: 2011-07-13
  Type: Version format compliance