2O55

Crystal Structure of a putative glycerophosphodiester phosphodiesterase from Galdieria sulphuraria


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.806 Å
  • R-Value Free: 0.255 
  • R-Value Work: 0.192 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Crystal Structure of a putative glycerophosphodiester phosphodiesterase from Galdieria sulphuraria

Mccoy, J.G.Wesenberg, G.E.Phillips Jr., G.N.Bitto, E.Bingman, C.A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
putative glycerophosphodiester phosphodiesterase
A
258N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.806 Å
  • R-Value Free: 0.255 
  • R-Value Work: 0.192 
  • Space Group: P 31 2 1
Unit Cell:
Length (Å)Angle (°)
a = 102.427α = 90.00
b = 102.427β = 90.00
c = 51.709γ = 120.00
Software Package:
Software NamePurpose
REFMACrefinement
DMphasing
HKL-2000data reduction
SCALEPACKdata scaling
SHARPphasing
PDB_EXTRACTdata extraction
DENZOdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2006-12-19
    Type: Initial release
  • Version 1.1: 2008-05-01
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Advisory, Version format compliance
  • Version 1.3: 2017-10-18
    Type: Refinement description