2O3G | pdb_00002o3g

Structural Genomics, the crystal structure of a conserved putative domain from Neisseria meningitidis MC58

• PDB DOI: https://doi.org/10.2210/pdb2O3G/pdb

• Classification: MEMBRANE PROTEIN
• Organism(s): Neisseria meningitidis MC58
• Expression System: Escherichia coli BL21
• Mutation(s): Yes 


• Deposited: 2006-12-01 Released: 2007-01-02 
• Deposition Author(s): Tan, K., Volkart, L., Gu, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.55 Å
• R-Value Free: 
  0.260 (Depositor), 0.240 (DCC) 
• R-Value Work: 
  0.242 (Depositor), 0.240 (DCC) 
• R-Value Observed: 
  0.243 (Depositor) 

Literature

The crystal structure of a conserved putative domain from Neisseria meningitidis MC58

Tan, K., Volkart, L., Gu, M., Joachimiak, A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 10.63 kDa 
• Atom Count: 629 
• Modeled Residue Count: 76 
• Deposited Residue Count: 92 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative protein	A	92	Neisseria meningitidis MC58	Mutation(s): 1  Gene Names: NMB1485
UniProt
Find proteins for Q9JYP7 (Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)) Explore Q9JYP7  Go to UniProtKB:  Q9JYP7

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
EDO	B [auth A], C [auth A], D [auth A]	1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.55 Å
• R-Value Free:  0.260 (Depositor), 0.240 (DCC) 
• R-Value Work:  0.242 (Depositor), 0.240 (DCC) 
• R-Value Observed: 0.243 (Depositor) 

Space Group: I 4 3 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 129.828	α = 90
b = 129.828	β = 90
c = 129.828	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
SBC-Collect	data collection
HKL-3000	data reduction
HKL-3000	data scaling
HKL-3000	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-01-02 
Deposition Author(s): Tan, K., Volkart, L., Gu, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History  

• Version 1.0: 2007-01-02
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Source and taxonomy, Version format compliance
• Version 1.3: 2023-12-27
  Changes: Data collection, Database references, Derived calculations
• Version 1.4: 2024-10-30
  Changes: Structure summary