2O3A | pdb_00002o3a

Crystal structure of a protein AF_0751 from Archaeoglobus fulgidus

PDB DOI: https://doi.org/10.2210/pdb2O3A/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Archaeoglobus fulgidus
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2006-12-01 Released: 2006-12-26
Deposition Author(s): Bonanno, J.B., Dickey, M., Bain, K.T., Wu, B., Slocombe, A., Sridhar, V., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free:
0.292 (Depositor), 0.285 (DCC)
R-Value Work:
0.230 (Depositor), 0.225 (DCC)
R-Value Observed:
0.233 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 2O3A

This is version 1.7 of the entry. See complete history.

Literature

Crystal structure of a protein AF_0751 from Archaeoglobus fulgidus

Bonanno, J.B., Dickey, M., Bain, K.T., Wu, B., Slocombe, A., Sridhar, V., Sauder, J.M., Burley, S.K., Almo, S.C.

To be published.

Macromolecule Content

Total Structure Weight: 40.54 kDa
Atom Count: 2,679
Modeled Residue Count: 324
Deposited Residue Count: 356
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
UPF0106 protein AF_0751	A, B	178	Archaeoglobus fulgidus	Mutation(s): 0 Gene Names: AF_0751 EC: 2.1.1.206
UniProt
Find proteins for O29507 (Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)) Explore O29507 Go to UniProtKB: O29507
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O29507
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.292 (Depositor), 0.285 (DCC)
R-Value Work: 0.230 (Depositor), 0.225 (DCC)
R-Value Observed: 0.233 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 53.294	α = 90
b = 55.89	β = 90
c = 108.784	γ = 90

Software Package:

Software Name	Purpose
SCALA	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
MAR345	data collection
MOSFLM	data reduction
CCP4	data scaling
SHELXD	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2006-12-26

Deposition Author(s):

New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History (Full details and data files)

Version 1.0: 2006-12-26
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2012-10-24
Changes: Database references, Structure summary
Version 1.4: 2017-10-18
Changes: Refinement description
Version 1.5: 2018-11-14
Changes: Data collection, Structure summary
Version 1.6: 2021-02-03
Changes: Database references, Structure summary
Version 1.7: 2023-12-27
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.