2O2T | pdb_00002o2t

The crystal structure of the 1st PDZ domain of MPDZ

• PDB DOI: https://doi.org/10.2210/pdb2O2T/pdb

• Classification: STRUCTURAL PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2006-11-30 Released: 2006-12-12 
• Deposition Author(s): Papagrigoriou, E., Gileadi, C., Phillips, C., Johansson, C., Salah, E., Savitsky, P., Gorrec, F., Umeano, C., Berridge, G., Pike, A.C.W., Elkins, J., Edwards, A., Arrowsmith, C., Weigelt, J., Sundstrom, M., Doyle, D.A., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.70 Å
• R-Value Free: 
  0.291 (Depositor), 0.294 (DCC) 
• R-Value Work: 
  0.224 (Depositor), 0.226 (DCC) 
• R-Value Observed: 
  0.227 (Depositor) 

Literature

The crystal structure of the 1st PDZ domain of MPDZ

Papagrigoriou, E., Gileadi, C., Phillips, C., Elkins, J., Johansson, C., Salah, E., Savitsky, P., Berridge, G., Doyle, D.A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 25.8 kDa 
• Atom Count: 1,638 
• Modeled Residue Count: 219 
• Deposited Residue Count: 234 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Multiple PDZ domain protein	A, B	117	Homo sapiens	Mutation(s): 0  Gene Names: MPDZ, MUPP1
UniProt & NIH Common Fund Data Resources
Find proteins for O75970 (Homo sapiens) Explore O75970  Go to UniProtKB:  O75970
PHAROS:  O75970 GTEx:  ENSG00000107186

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.70 Å
• R-Value Free:  0.291 (Depositor), 0.294 (DCC) 
• R-Value Work:  0.224 (Depositor), 0.226 (DCC) 
• R-Value Observed: 0.227 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 100.366	α = 90
b = 32.66	β = 110.68
c = 92.803	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data collection
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2006-12-12 
Deposition Author(s): Papagrigoriou, E., Gileadi, C., Phillips, C., Johansson, C., Salah, E., Savitsky, P., Gorrec, F., Umeano, C., Berridge, G., Pike, A.C.W., Elkins, J., Edwards, A., Arrowsmith, C., Weigelt, J., Sundstrom, M., Doyle, D.A., Structural Genomics Consortium (SGC)

Revision History  

• Version 1.0: 2006-12-12
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Advisory, Version format compliance
• Version 1.3: 2023-12-27
  Changes: Data collection, Database references, Refinement description