2O23

The structure of wild-type human HADH2 (17beta-hydroxysteroid dehydrogenase type 10) bound to NAD+ at 1.2 A


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.2 Å
  • R-Value Free: 0.154 
  • R-Value Work: 0.123 

wwPDB Validation 3D Report Full Report


This is version 1.4 of the entry. See complete history

Literature

The structure of wild-type human HADH2 (17beta-hydroxysteroid dehydrogenase type 10) bound to NAD+ at 1.2 A

KAVANAGH, K.L.SHAFQAT, N.SCHOLER, K.DEBRECZENI, J.ZSCHOCKE, J.von Delft, F.WEIGELT, J.ARROWSMITH, C.SUNDSTROM, M.EDWARDS, A.OPPERMANN, U.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
HADH2 protein
A, B
265Homo sapiensGene Names: HSD17B10 (ERAB, HADH2, MRPP2, SCHAD, SDR5C1, XH98G2)
EC: 1.1.1.178, 1.1.1.35, 1.1.1.51
Find proteins for Q99714 (Homo sapiens)
Go to Gene View: HSD17B10
Go to UniProtKB:  Q99714
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
B
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
NAD
Query on NAD

Download SDF File 
Download CCD File 
A, B
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.2 Å
  • R-Value Free: 0.154 
  • R-Value Work: 0.123 
  • Space Group: P 32 2 1
Unit Cell:
Length (Å)Angle (°)
a = 117.037α = 90.00
b = 117.037β = 90.00
c = 69.087γ = 120.00
Software Package:
Software NamePurpose
CCP4data scaling
MAR345data collection
MOSFLMdata reduction
PHASERphasing
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2006-12-12
    Type: Initial release
  • Version 1.1: 2008-05-01
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Derived calculations, Version format compliance
  • Version 1.3: 2017-10-18
    Type: Refinement description
  • Version 1.4: 2018-01-31
    Type: Database references, Structure summary