2NT2 | pdb_00002nt2

Crystal Structure of Slingshot phosphatase 2

PDB DOI: https://doi.org/10.2210/pdb2NT2/pdb

Classification: HYDROLASE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2006-11-06 Released: 2007-06-05
Deposition Author(s): Jung, S.K., Jeong, D.G., Yoon, T.S., Kim, J.H., Ryu, S.E., Kim, S.J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free:
0.174 (Depositor), 0.146 (DCC)
R-Value Work:
0.142 (Depositor), 0.141 (DCC)
R-Value Observed:
0.144 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 2NT2

This is version 1.4 of the entry. See complete history.

Literature

Crystal structure of human slingshot phosphatase 2.

Jung, S.K., Jeong, D.G., Yoon, T.S., Kim, J.H., Ryu, S.E., Kim, S.J.

(2007) Proteins 68: 408-412

PubMed: 17427953 Search on PubMed
DOI: https://doi.org/10.1002/prot.21399
Primary Citation Related Structures:
2NT2

Organizational Affiliation

Systemic Proteomics Research Center, Korea Research Institute of Bioscience and Biotechnology, Yuseong-Gu, Daejeon 305-333, Republic of Korea.

Macromolecule Content

Total Structure Weight: 51.49 kDa
Atom Count: 3,634
Modeled Residue Count: 426
Deposited Residue Count: 435
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein phosphatase Slingshot homolog 2	A, B, C	145	Homo sapiens	Mutation(s): 2 Gene Names: SSH2, KIAA1725, SSH2L EC: 3.1.3.48 (PDB Primary Data), 3.1.3.16 (PDB Primary Data)
UniProt & NIH Common Fund Data Resources
Find proteins for Q76I76 (Homo sapiens) Explore Q76I76 Go to UniProtKB: Q76I76
PHAROS: Q76I76 GTEx: ENSG00000141298
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q76I76
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download:Ideal Coordinates CCD File SDF format, chain F [auth C] SDF format, chain E [auth B] SDF format, chain D [auth A] MOL2 format, chain F [auth C] MOL2 format, chain E [auth B] MOL2 format, chain D [auth A] mmCIF format, chain F [auth C] mmCIF format, chain E [auth B] mmCIF format, chain D [auth A]	D [auth A], E [auth B], F [auth C]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain D [auth A] Focus chain E [auth B] Focus chain F [auth C] Interactions & Density Focus chain D [auth A] Focus chain E [auth B] Focus chain F [auth C]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.174 (Depositor), 0.146 (DCC)
R-Value Work: 0.142 (Depositor), 0.141 (DCC)
R-Value Observed: 0.144 (Depositor)

Space Group: P 3₂

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 94.58	α = 90
b = 94.58	β = 90
c = 38.77	γ = 120

Software Package:

Software Name	Purpose
ADSC	data collection
PHASER	phasing
SHELXL-97	refinement
MOSFLM	data reduction
SCALA	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2007-06-05

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2007-06-05
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2021-10-20
Changes: Database references, Derived calculations
Version 1.4: 2023-08-30
Changes: Data collection, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.