2NPO | pdb_00002npo

Crystal structure of putative transferase from Campylobacter jejuni subsp. jejuni NCTC 11168

PDB DOI: https://doi.org/10.2210/pdb2NPO/pdb

Classification: TRANSFERASE
Organism(s): Campylobacter jejuni
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2006-10-27 Released: 2006-11-07
Deposition Author(s): Jin, X., Bera, A., Wasserman, S., Smith, D., Sauder, J.M., Burley, S.K., Shapiro, L., New York SGX Research Center for Structural Genomics (NYSGXRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free:
0.251 (Depositor), 0.243 (DCC)
R-Value Work:
0.206 (Depositor), 0.199 (DCC)
R-Value Observed:
0.208 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.5 of the entry. See complete history.

Literature

Crystal structure of putative transferase from Campylobacter jejuni subsp. jejuni NCTC 11168

Jin, X., Bera, A., Wasserman, S., Smith, D., Sauder, J.M., Burley, S.K., Shapiro, L.

To be published.

Macromolecule Content

Total Structure Weight: 22.53 kDa
Atom Count: 1,601
Modeled Residue Count: 193
Deposited Residue Count: 207
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Acetyltransferase	A	207	Campylobacter jejuni	Mutation(s): 0 Gene Names: pglD EC: 2.7.7.23 (PDB Primary Data), 2.3.1.203 (UniProt)
UniProt
Find proteins for Q0P9D1 (Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)) Explore Q0P9D1 Go to UniProtKB: Q0P9D1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q0P9D1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.251 (Depositor), 0.243 (DCC)
R-Value Work: 0.206 (Depositor), 0.199 (DCC)
R-Value Observed: 0.208 (Depositor)

Space Group: P 6₃

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 87.141	α = 90
b = 87.141	β = 90
c = 65.118	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
ADSC	data collection
DENZO	data reduction
SCALEPACK	data scaling
SHARP	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2006-11-07

Deposition Author(s):

New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History (Full details and data files)

Version 1.0: 2006-11-07
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Advisory, Derived calculations, Version format compliance
Version 1.3: 2018-11-14
Changes: Data collection, Structure summary
Version 1.4: 2021-02-03
Changes: Database references, Structure summary
Version 1.5: 2023-12-27
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.