2NDB

NMR structure of omega-agatoxin IVA in DPC micelles


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structure-activity relationships of omega-Agatoxin IVA in lipid membranes

Ryu, J.H.Jung, H.J.Konishi, S.Kim, H.H.Park, Z.Y.Kim, J.I.

(2017) Biochem Biophys Res Commun 482: 170-175

  • DOI: 10.1016/j.bbrc.2016.11.025
  • Primary Citation of Related Structures:  
    2NDB

  • PubMed Abstract: 
  • To analyze structural features of ω-Aga IVA, a gating modifier toxin from spider venom, we here investigated the NMR solution structure of ω-Aga IVA within DPC micelles. Under those conditions, the Cys-rich central region of ω-Aga IVA still retains the inhibitor Cys knot motif with three short antiparallel β-strands seen in water ...

    To analyze structural features of ω-Aga IVA, a gating modifier toxin from spider venom, we here investigated the NMR solution structure of ω-Aga IVA within DPC micelles. Under those conditions, the Cys-rich central region of ω-Aga IVA still retains the inhibitor Cys knot motif with three short antiparallel β-strands seen in water. However, 15 N HSQC spectra of ω-Aga IVA within micelles revealed that there are radical changes to the toxin's C-terminal tail and several loops upon binding to micelles. The C-terminal tail of ω-Aga IVA appears to assume a β-turn like conformation within micelles, though it is disordered in water. Whole-cell patch clamp studies with several ω-Aga IVA analogs indicate that both the hydrophobic C-terminal tail and an Arg patch in the core region of ω-Aga IVA are critical for Cav2.1 blockade. These results suggest that the membrane environment stabilizes the structure of the toxin, enabling it to act in a manner similar to other gating modifier toxins, though its mode of interaction with the membrane and the channel is unique.


    Organizational Affiliation

    School of Life Sciences, Gwangju Institute of Science and Technology, 123, Cheomdangwagi-ro, Buk-gu, Gwangju, Republic of Korea. Electronic address: jikim@gist.ac.kr.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Omega-agatoxin-Aa4aA49Agelenopsis apertaMutation(s): 0 
UniProt
Find proteins for P30288 (Agelenopsis aperta)
Explore P30288 
Go to UniProtKB:  P30288
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 
  • OLDERADO: 2NDB Olderado

Structure Validation

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Entry History 

Deposition Data

  • Deposited Date: 2016-05-12 
  • Released Date: 2017-09-13 
  • Deposition Author(s): Ryu, J.H., Kim, J.I.

Revision History  (Full details and data files)

  • Version 1.0: 2017-09-13
    Type: Initial release