2N9D

Structure analysis of the Tom1 GAT domain reveals distinct ligand-specific conformational states


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 3000 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


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Literature

Structure of the GAT domain of the endosomal adapter protein Tom1.

Xiao, S.Ellena, J.F.Armstrong, G.S.Capelluto, D.G.

(2016) Data Brief 7: 344-348

  • DOI: https://doi.org/10.1016/j.dib.2016.02.042
  • Primary Citation of Related Structures:  
    2N9D

  • PubMed Abstract: 

    Cellular homeostasis requires correct delivery of cell-surface receptor proteins (cargo) to their target subcellular compartments. The adapter proteins Tom1 and Tollip are involved in sorting of ubiquitinated cargo in endosomal compartments. Recruitment of Tom1 to the endosomal compartments is mediated by its GAT domain's association to Tollip's Tom1-binding domain (TBD). In this data article, we report the solution NMR-derived structure of the Tom1 GAT domain. The estimated protein structure exhibits a bundle of three helical elements. We compare the Tom1 GAT structure with those structures corresponding to the Tollip TBD- and ubiquitin-bound states.


  • Organizational Affiliation

    Protein Signaling Domains Laboratory, Department of Biological Sciences, Biocomplexity Institute, Virginia Tech, Blacksburg, VA 24061, USA; School of Materials and Metallurgy, Inner Mongolia University of Science and Technology, PR China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Target of Myb protein 1100Homo sapiensMutation(s): 0 
Gene Names: TOM1
UniProt & NIH Common Fund Data Resources
Find proteins for O60784 (Homo sapiens)
Explore O60784 
Go to UniProtKB:  O60784
PHAROS:  O60784
GTEx:  ENSG00000100284 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO60784
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 3000 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-09-21
    Type: Initial release