2N8M | pdb_00002n8m

Zipcode-binding-protein-1 KH3(DD)KH4 domains in complex with the KH4 RNA target

PDB DOI: https://doi.org/10.2210/pdb2N8M/pdb
NAKB: 2N8M
BMRB: 25855

Classification: RNA Binding Protein/RNA
Organism(s): Gallus gallus, synthetic construct
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2015-10-21 Released: 2017-01-25
Deposition Author(s): Nicastro, G., Ramos, A., Candel, A., Hollingworth, D.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 12
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history.

Literature

Zipcode-binding-protein-1 KH3(DD)KH4 domains in complex with the RNA target UCGGACU

Nicastro, G., Ramos, A., Candel, A., Hollingworth, D.

To be published.

Macromolecule Content

Total Structure Weight: 22.81 kDa
Atom Count: 1,597
Modeled Residue Count: 198
Deposited Residue Count: 198
Unique protein chains: 1
Unique nucleic acid chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Insulin-like growth factor 2 mRNA-binding protein 1	A	191	Gallus gallus	Mutation(s): 3 Gene Names: IGF2BP1, VICKZ1, ZBP1
UniProt
Find proteins for O42254 (Gallus gallus) Explore O42254 Go to UniProtKB: O42254
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O42254
Sequence Annotations Expand
Reference Sequence

Find similar nucleic acids by: Sequence

Molecule	Chains	Length	Organism	Image
Entity ID: 2
RNA (5'-R(PUPCPGPGPAPCP*U)-3')	B	7	synthetic construct
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 12
Selection Criteria: structures with the lowest energy

Structure Validation

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Entry History

Deposition Data

Released Date: 2017-01-25

Deposition Author(s):

Hollingworth, D.

Revision History (Full details and data files)

Version 1.0: 2017-01-25
Type: Initial release
Version 1.1: 2023-06-14
Changes: Data collection, Database references, Other
Version 1.2: 2024-05-15
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.