2MXZ | pdb_00002mxz

Bacteriophage T5 l-alanoyl-d-glutamate peptidase comlpex with Zn2+ (Endo T5-ZN2+)

PDB DOI: https://doi.org/10.2210/pdb2MXZ/pdb
BMRB: 25437

Classification: HYDROLASE
Organism(s): Tequintavirus T5
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2015-01-19 Released: 2015-02-11
Deposition Author(s): Prokhorov, D.A., Mikoulinskaia, G.V., Kutyshenko, V.P.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function

wwPDB Validation 3D Report Full Report

Validation slider image for 2MXZ

This is version 1.3 of the entry. See complete history.

Literature

High-resolution NMR structure of a Zn2+-containing form of the bacteriophage T5 L-alanyl-D-glutamate peptidase

Prokhorov, D.A., Mikoulinskaia, G.V., Molochkov, N.V., Uversky, V.N., Kutyshenko, V.P.

(2015) RSC Adv 5: 41041-41049

DOI: https://doi.org/10.1039/C5RA05993C

Macromolecule Content

Total Structure Weight: 15.35 kDa
Atom Count: 1,081
Modeled Residue Count: 137
Deposited Residue Count: 137
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
L-alanyl-D-glutamate peptidase	A	137	Tequintavirus T5	Mutation(s): 0 Gene Names: lys, T5.040, T5p039 EC: 3.4.24
UniProt
Find proteins for Q6QGP7 (Escherichia phage T5) Explore Q6QGP7 Go to UniProtKB: Q6QGP7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q6QGP7
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function

Structure Validation

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Entry History

Deposition Data

Released Date: 2015-02-11

Deposition Author(s):

Prokhorov, D.A.

Mikoulinskaia, G.V.

Kutyshenko, V.P.

Revision History (Full details and data files)

Version 1.0: 2015-02-11
Type: Initial release
Version 1.1: 2015-08-05
Changes: Database references
Version 1.2: 2023-06-14
Changes: Data collection, Database references, Derived calculations, Other
Version 1.3: 2024-05-15
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.