Biological Assembly 1  

 3D View: Structure

Pseudo Symmetry: Cyclic - C2  (3D View)
Pseudo Stoichiometry: Homo 2-mer - A2 Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 20.22 kDa 
• Atom Count: 1415 
• Modelled Residue Count: 180 
• Deposited Residue Count: 180 
• Unique protein chains: 2

2MUT

Solution structure of the F231L mutant ERCC1-XPF dimerization region

• DOI: 10.2210/pdb2MUT/pdb
• BMRB: 25232

• Classification: HYDROLASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21
• Mutation(s): Yes 


• Deposited: 2014-09-17 Released: 2015-06-24 
• Deposition Author(s): Faridounnia, M., Wienk, H., Kovacic, L., Folkers, G.E., Jaspers, N.G.J., Kaptein, R., Hoeijmakers, J.H.J., Boelens, R.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Literature

The Cerebro-oculo-facio-skeletal Syndrome Point Mutation F231L in the ERCC1 DNA Repair Protein Causes Dissociation of the ERCC1-XPF Complex.

Faridounnia, M., Wienk, H., Kovacic, L., Folkers, G.E., Jaspers, N.G., Kaptein, R., Hoeijmakers, J.H., Boelens, R.

(2015) J Biol Chem 290: 20541-20555

• PubMed: 26085086 
• DOI: 10.1074/jbc.M114.635169
• Primary Citation of Related Structures:  
  2MUT


• PubMed Abstract: 
  

The ERCC1-XPF heterodimer, a structure-specific DNA endonuclease, is best known for its function in the nucleotide excision repair (NER) pathway. The ERCC1 point mutation F231L, located at the hydrophobic interaction interface of ERCC1 (excision repair cross-complementation group 1) and XPF (xeroderma pigmentosum complementation group F), leads to severe NER pathway deficiencies. Here, we analyze biophysical properties and report the NMR structure of the complex of the C-terminal tandem helix-hairpin-helix domains of ERCC1-XPF that contains this mutation. The structures of wild type and the F231L mutant are very similar. The F231L mutation results in only a small disturbance of the ERCC1-XPF interface, where, in contrast to Phe(231), Leu(231) lacks interactions stabilizing the ERCC1-XPF complex. One of the two anchor points is severely distorted, and this results in a more dynamic complex, causing reduced stability and an increased dissociation rate of the mutant complex as compared with wild type. These data provide a biophysical explanation for the severe NER deficiencies caused by this mutation.

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Organizational Affiliation: 

From the Bijvoet Center for Biomolecular Research, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands, [e-mail].

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA excision repair protein ERCC-1	A	96	Homo sapiens	Mutation(s): 1  Gene Names: ERCC1
UniProt & NIH Common Fund Data Resources
Find proteins for P07992 (Homo sapiens) Explore P07992  Go to UniProtKB:  P07992
PHAROS:  P07992 GTEx:  ENSG00000012061

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA repair endonuclease XPF	B	84	Homo sapiens	Mutation(s): 0  Gene Names: ERCC4, ERCC11, XPF EC: 3.1
UniProt & NIH Common Fund Data Resources
Find proteins for Q92889 (Homo sapiens) Explore Q92889  Go to UniProtKB:  Q92889
PHAROS:  Q92889 GTEx:  ENSG00000175595

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 
• OLDERADO: 2MUT Olderado

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2014-09-17 
• Released Date: 2015-06-24 
Deposition Author(s): Faridounnia, M., Wienk, H., Kovacic, L., Folkers, G.E., Jaspers, N.G.J., Kaptein, R., Hoeijmakers, J.H.J., Boelens, R.

Revision History  

• Version 1.0: 2015-06-24
  Type: Initial release
  
• Version 1.1: 2015-08-26
  Changes: Database references